Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02520

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02515 and CA264_02520 are separated by 99 nucleotidesCA264_02520 and CA264_02525 are separated by 24 nucleotides CA264_02515: CA264_02515 - nitrite reductase, at 586,848 to 588,941 _02515 CA264_02520: CA264_02520 - uroporphyrinogen-III C-methyltransferase, at 589,041 to 589,877 _02520 CA264_02525: CA264_02525 - siroheme synthase, at 589,902 to 591,431 _02525 Position (kb) 589 590Strain fitness (log2 ratio) -2 -1 0 1 2at 588.089 kb on + strand, within CA264_02515at 588.093 kb on - strand, within CA264_02515at 588.185 kb on + strand, within CA264_02515at 588.185 kb on + strand, within CA264_02515at 588.284 kb on - strand, within CA264_02515at 588.318 kb on - strand, within CA264_02515at 588.456 kb on + strand, within CA264_02515at 588.464 kb on - strand, within CA264_02515at 588.587 kb on - strand, within CA264_02515at 588.590 kb on + strand, within CA264_02515at 588.590 kb on + strand, within CA264_02515at 588.590 kb on + strand, within CA264_02515at 588.590 kb on + strand, within CA264_02515at 588.591 kb on - strand, within CA264_02515at 588.678 kb on + strand, within CA264_02515at 588.875 kb on - strandat 588.972 kb on - strandat 588.996 kb on + strandat 588.997 kb on - strandat 589.063 kb on + strandat 589.070 kb on + strandat 589.070 kb on + strandat 589.107 kb on + strandat 589.107 kb on + strandat 589.109 kb on + strandat 589.133 kb on - strand, within CA264_02520at 589.133 kb on - strand, within CA264_02520at 589.237 kb on + strand, within CA264_02520at 589.242 kb on + strand, within CA264_02520at 589.267 kb on + strand, within CA264_02520at 589.315 kb on + strand, within CA264_02520at 589.469 kb on + strand, within CA264_02520at 589.507 kb on + strand, within CA264_02520at 589.507 kb on + strand, within CA264_02520at 589.508 kb on - strand, within CA264_02520at 589.538 kb on + strand, within CA264_02520at 589.539 kb on - strand, within CA264_02520at 589.577 kb on - strand, within CA264_02520at 589.610 kb on - strand, within CA264_02520at 589.610 kb on - strand, within CA264_02520at 589.624 kb on + strand, within CA264_02520at 589.629 kb on - strand, within CA264_02520at 589.629 kb on - strand, within CA264_02520at 589.676 kb on + strand, within CA264_02520at 589.676 kb on + strand, within CA264_02520at 589.677 kb on - strand, within CA264_02520at 589.691 kb on - strand, within CA264_02520at 589.742 kb on + strand, within CA264_02520at 589.743 kb on - strand, within CA264_02520at 589.746 kb on - strand, within CA264_02520at 589.746 kb on - strand, within CA264_02520at 589.749 kb on - strand, within CA264_02520at 589.811 kb on + strandat 589.811 kb on + strandat 589.811 kb on + strandat 589.812 kb on - strandat 589.812 kb on - strandat 589.815 kb on + strandat 589.815 kb on + strandat 589.873 kb on + strandat 589.874 kb on - strandat 589.874 kb on - strandat 589.874 kb on - strandat 589.875 kb on + strandat 589.876 kb on - strandat 589.876 kb on - strandat 589.879 kb on + strandat 589.881 kb on + strandat 589.881 kb on + strandat 589.897 kb on + strandat 589.926 kb on - strandat 590.058 kb on - strand, within CA264_02525at 590.059 kb on + strand, within CA264_02525at 590.086 kb on + strand, within CA264_02525at 590.086 kb on + strand, within CA264_02525at 590.086 kb on + strand, within CA264_02525at 590.149 kb on + strand, within CA264_02525at 590.150 kb on - strand, within CA264_02525at 590.444 kb on + strand, within CA264_02525at 590.655 kb on - strand, within CA264_02525at 590.672 kb on - strand, within CA264_02525at 590.684 kb on - strand, within CA264_02525at 590.732 kb on + strand, within CA264_02525at 590.824 kb on + strand, within CA264_02525

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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588,089 + CA264_02515 0.59 +1.0
588,093 - CA264_02515 0.59 -0.4
588,185 + CA264_02515 0.64 +1.3
588,185 + CA264_02515 0.64 +1.7
588,284 - CA264_02515 0.69 +0.5
588,318 - CA264_02515 0.70 +1.2
588,456 + CA264_02515 0.77 +0.7
588,464 - CA264_02515 0.77 +0.8
588,587 - CA264_02515 0.83 +1.0
588,590 + CA264_02515 0.83 +0.9
588,590 + CA264_02515 0.83 +1.3
588,590 + CA264_02515 0.83 +1.1
588,590 + CA264_02515 0.83 +0.7
588,591 - CA264_02515 0.83 +0.2
588,678 + CA264_02515 0.87 +1.0
588,875 - +0.6
588,972 - -0.4
588,996 + +1.7
588,997 - -2.2
589,063 + -0.3
589,070 + +0.8
589,070 + +0.6
589,107 + +1.3
589,107 + +0.6
589,109 + +0.8
589,133 - CA264_02520 0.11 +0.3
589,133 - CA264_02520 0.11 +0.7
589,237 + CA264_02520 0.23 +1.8
589,242 + CA264_02520 0.24 +0.4
589,267 + CA264_02520 0.27 +0.2
589,315 + CA264_02520 0.33 +0.7
589,469 + CA264_02520 0.51 -1.6
589,507 + CA264_02520 0.56 +0.9
589,507 + CA264_02520 0.56 -1.2
589,508 - CA264_02520 0.56 +0.4
589,538 + CA264_02520 0.59 +1.2
589,539 - CA264_02520 0.59 +0.7
589,577 - CA264_02520 0.64 +0.7
589,610 - CA264_02520 0.68 +0.7
589,610 - CA264_02520 0.68 +0.5
589,624 + CA264_02520 0.70 +0.1
589,629 - CA264_02520 0.70 +0.3
589,629 - CA264_02520 0.70 +0.7
589,676 + CA264_02520 0.76 +0.5
589,676 + CA264_02520 0.76 +0.4
589,677 - CA264_02520 0.76 -0.4
589,691 - CA264_02520 0.78 +1.6
589,742 + CA264_02520 0.84 +1.0
589,743 - CA264_02520 0.84 +1.8
589,746 - CA264_02520 0.84 +0.2
589,746 - CA264_02520 0.84 +0.8
589,749 - CA264_02520 0.85 +1.7
589,811 + -1.6
589,811 + -0.5
589,811 + -0.3
589,812 - -0.2
589,812 - +0.7
589,815 + -1.2
589,815 + -0.9
589,873 + -0.0
589,874 - +0.2
589,874 - +0.2
589,874 - +0.5
589,875 + -0.5
589,876 - +1.1
589,876 - +0.9
589,879 + +1.2
589,881 + -0.8
589,881 + -0.7
589,897 + +0.2
589,926 - +0.7
590,058 - CA264_02525 0.10 +0.1
590,059 + CA264_02525 0.10 -0.2
590,086 + CA264_02525 0.12 +0.4
590,086 + CA264_02525 0.12 +0.7
590,086 + CA264_02525 0.12 +0.6
590,149 + CA264_02525 0.16 +0.5
590,150 - CA264_02525 0.16 +0.1
590,444 + CA264_02525 0.35 +0.5
590,655 - CA264_02525 0.49 +0.7
590,672 - CA264_02525 0.50 +1.0
590,684 - CA264_02525 0.51 +0.8
590,732 + CA264_02525 0.54 -0.7
590,824 + CA264_02525 0.60 -0.3

Or see this region's nucleotide sequence