Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02345

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02340 and CA264_02345 are separated by 165 nucleotidesCA264_02345 and CA264_02350 are separated by 25 nucleotides CA264_02340: CA264_02340 - hypothetical protein, at 540,458 to 541,957 _02340 CA264_02345: CA264_02345 - restriction endonuclease, at 542,123 to 542,416 _02345 CA264_02350: CA264_02350 - nicotinate phosphoribosyltransferase, at 542,442 to 543,908 _02350 Position (kb) 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 541.151 kb on + strand, within CA264_02340at 541.152 kb on - strand, within CA264_02340at 541.152 kb on - strand, within CA264_02340at 541.152 kb on - strand, within CA264_02340at 541.161 kb on - strand, within CA264_02340at 541.161 kb on - strand, within CA264_02340at 541.368 kb on + strand, within CA264_02340at 541.407 kb on - strand, within CA264_02340at 541.407 kb on - strand, within CA264_02340at 541.407 kb on - strand, within CA264_02340at 541.553 kb on - strand, within CA264_02340at 541.555 kb on - strand, within CA264_02340at 541.571 kb on + strand, within CA264_02340at 541.571 kb on + strand, within CA264_02340at 541.572 kb on - strand, within CA264_02340at 541.572 kb on - strand, within CA264_02340at 541.573 kb on + strand, within CA264_02340at 541.695 kb on - strand, within CA264_02340at 541.814 kb on + strandat 541.846 kb on - strandat 541.874 kb on + strandat 541.875 kb on - strandat 541.883 kb on + strandat 541.884 kb on - strandat 542.030 kb on - strandat 542.030 kb on - strandat 542.030 kb on - strandat 542.035 kb on - strandat 542.092 kb on + strandat 542.095 kb on + strandat 542.096 kb on - strandat 542.096 kb on - strandat 542.098 kb on - strandat 542.098 kb on - strandat 542.098 kb on - strandat 542.098 kb on - strandat 542.119 kb on - strandat 542.127 kb on + strandat 542.149 kb on - strandat 542.149 kb on - strandat 542.149 kb on - strandat 542.151 kb on + strandat 542.151 kb on + strandat 542.281 kb on + strand, within CA264_02345at 542.282 kb on - strand, within CA264_02345at 542.306 kb on + strand, within CA264_02345at 542.311 kb on + strand, within CA264_02345at 542.312 kb on - strand, within CA264_02345at 542.312 kb on - strand, within CA264_02345at 542.314 kb on + strand, within CA264_02345at 542.314 kb on + strand, within CA264_02345at 542.314 kb on + strand, within CA264_02345at 542.414 kb on + strandat 542.489 kb on - strandat 542.522 kb on - strandat 542.535 kb on + strandat 542.547 kb on + strandat 542.548 kb on - strandat 542.569 kb on - strandat 542.583 kb on - strandat 542.584 kb on + strandat 542.584 kb on + strandat 542.585 kb on - strandat 542.585 kb on - strandat 542.585 kb on - strandat 542.594 kb on + strand, within CA264_02350at 542.594 kb on + strand, within CA264_02350at 542.616 kb on - strand, within CA264_02350at 542.617 kb on + strand, within CA264_02350at 542.617 kb on + strand, within CA264_02350at 542.618 kb on - strand, within CA264_02350at 542.622 kb on - strand, within CA264_02350at 542.660 kb on + strand, within CA264_02350at 542.751 kb on - strand, within CA264_02350at 542.752 kb on + strand, within CA264_02350at 542.753 kb on - strand, within CA264_02350at 542.786 kb on - strand, within CA264_02350at 542.852 kb on + strand, within CA264_02350at 542.853 kb on - strand, within CA264_02350at 542.853 kb on - strand, within CA264_02350at 542.854 kb on + strand, within CA264_02350at 542.891 kb on - strand, within CA264_02350at 543.077 kb on - strand, within CA264_02350at 543.190 kb on - strand, within CA264_02350at 543.204 kb on - strand, within CA264_02350at 543.352 kb on + strand, within CA264_02350

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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541,151 + CA264_02340 0.46 +0.3
541,152 - CA264_02340 0.46 -0.3
541,152 - CA264_02340 0.46 +0.8
541,152 - CA264_02340 0.46 -1.9
541,161 - CA264_02340 0.47 -0.7
541,161 - CA264_02340 0.47 -0.5
541,368 + CA264_02340 0.61 -0.1
541,407 - CA264_02340 0.63 -0.5
541,407 - CA264_02340 0.63 +0.7
541,407 - CA264_02340 0.63 +0.2
541,553 - CA264_02340 0.73 -0.1
541,555 - CA264_02340 0.73 -1.4
541,571 + CA264_02340 0.74 +0.4
541,571 + CA264_02340 0.74 +0.4
541,572 - CA264_02340 0.74 -0.1
541,572 - CA264_02340 0.74 +0.0
541,573 + CA264_02340 0.74 -0.2
541,695 - CA264_02340 0.82 -0.2
541,814 + -0.3
541,846 - -0.2
541,874 + -1.0
541,875 - -0.5
541,883 + -0.5
541,884 - +0.2
542,030 - +0.1
542,030 - +0.1
542,030 - -0.2
542,035 - -0.5
542,092 + +1.9
542,095 + -1.1
542,096 - +0.1
542,096 - +0.7
542,098 - +0.7
542,098 - +0.3
542,098 - -0.0
542,098 - +0.8
542,119 - +0.1
542,127 + -0.5
542,149 - -1.1
542,149 - -0.6
542,149 - -0.0
542,151 + +0.3
542,151 + +0.3
542,281 + CA264_02345 0.54 +0.8
542,282 - CA264_02345 0.54 +0.3
542,306 + CA264_02345 0.62 +0.7
542,311 + CA264_02345 0.64 +1.6
542,312 - CA264_02345 0.64 -0.0
542,312 - CA264_02345 0.64 -0.5
542,314 + CA264_02345 0.65 -0.5
542,314 + CA264_02345 0.65 -0.4
542,314 + CA264_02345 0.65 -0.8
542,414 + +0.5
542,489 - -0.4
542,522 - +0.5
542,535 + -0.3
542,547 + -0.1
542,548 - -1.0
542,569 - -1.5
542,583 - -0.3
542,584 + -0.4
542,584 + -0.5
542,585 - -0.5
542,585 - -1.5
542,585 - -1.0
542,594 + CA264_02350 0.10 -0.8
542,594 + CA264_02350 0.10 -1.9
542,616 - CA264_02350 0.12 +0.5
542,617 + CA264_02350 0.12 -0.8
542,617 + CA264_02350 0.12 -0.9
542,618 - CA264_02350 0.12 +0.2
542,622 - CA264_02350 0.12 +1.3
542,660 + CA264_02350 0.15 -0.1
542,751 - CA264_02350 0.21 -3.4
542,752 + CA264_02350 0.21 +0.6
542,753 - CA264_02350 0.21 -0.8
542,786 - CA264_02350 0.23 +0.6
542,852 + CA264_02350 0.28 -0.0
542,853 - CA264_02350 0.28 -0.1
542,853 - CA264_02350 0.28 -0.8
542,854 + CA264_02350 0.28 -0.7
542,891 - CA264_02350 0.31 -1.1
543,077 - CA264_02350 0.43 -0.2
543,190 - CA264_02350 0.51 +0.1
543,204 - CA264_02350 0.52 -1.5
543,352 + CA264_02350 0.62 -0.7

Or see this region's nucleotide sequence