Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02185

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02175 and CA264_02180 are separated by 313 nucleotidesCA264_02180 and CA264_02185 are separated by 156 nucleotidesCA264_02185 and CA264_02190 are separated by 89 nucleotides CA264_02175: CA264_02175 - acyl-CoA desaturase, at 501,120 to 502,232 _02175 CA264_02180: CA264_02180 - response regulator, at 502,546 to 502,914 _02180 CA264_02185: CA264_02185 - GNAT family N-acetyltransferase, at 503,071 to 503,595 _02185 CA264_02190: CA264_02190 - hypothetical protein, at 503,685 to 504,674 _02190 Position (kb) 503 504Strain fitness (log2 ratio) -2 -1 0 1 2at 502.129 kb on + strandat 502.129 kb on + strandat 502.129 kb on + strandat 502.130 kb on - strandat 502.130 kb on - strandat 502.130 kb on - strandat 502.130 kb on - strandat 502.135 kb on - strandat 502.135 kb on - strandat 502.135 kb on - strandat 502.135 kb on - strandat 502.242 kb on + strandat 502.243 kb on - strandat 502.245 kb on - strandat 502.245 kb on - strandat 502.250 kb on - strandat 502.250 kb on - strandat 502.463 kb on - strandat 502.471 kb on + strandat 502.472 kb on - strandat 502.472 kb on - strandat 502.474 kb on + strandat 502.474 kb on + strandat 502.474 kb on + strandat 502.474 kb on + strandat 502.475 kb on - strandat 502.476 kb on + strandat 502.476 kb on + strandat 502.476 kb on + strandat 502.476 kb on + strandat 502.476 kb on + strandat 502.476 kb on + strandat 502.477 kb on - strandat 502.477 kb on - strandat 502.477 kb on - strandat 502.534 kb on - strandat 502.543 kb on + strandat 502.544 kb on - strandat 502.544 kb on - strandat 502.544 kb on - strandat 502.572 kb on + strandat 502.616 kb on + strand, within CA264_02180at 502.645 kb on - strand, within CA264_02180at 502.831 kb on + strand, within CA264_02180at 502.857 kb on - strand, within CA264_02180at 502.889 kb on + strandat 502.889 kb on + strandat 502.890 kb on - strandat 502.913 kb on - strandat 502.932 kb on + strandat 502.933 kb on - strandat 502.967 kb on + strandat 503.031 kb on - strandat 503.031 kb on - strandat 503.042 kb on + strandat 503.043 kb on - strandat 503.155 kb on + strand, within CA264_02185at 503.156 kb on - strand, within CA264_02185at 503.189 kb on - strand, within CA264_02185at 503.263 kb on + strand, within CA264_02185at 503.304 kb on - strand, within CA264_02185at 503.362 kb on + strand, within CA264_02185at 503.426 kb on - strand, within CA264_02185at 503.460 kb on - strand, within CA264_02185at 503.658 kb on - strandat 503.672 kb on - strandat 503.680 kb on - strandat 503.712 kb on + strandat 503.712 kb on + strandat 503.713 kb on - strandat 503.713 kb on - strandat 503.713 kb on - strandat 503.713 kb on - strandat 503.713 kb on - strandat 503.717 kb on + strandat 503.718 kb on - strandat 503.719 kb on + strandat 503.719 kb on + strandat 503.720 kb on - strandat 503.784 kb on - strand, within CA264_02190at 503.784 kb on - strand, within CA264_02190at 503.784 kb on - strand, within CA264_02190at 503.937 kb on + strand, within CA264_02190at 503.937 kb on + strand, within CA264_02190at 503.941 kb on - strand, within CA264_02190at 503.992 kb on + strand, within CA264_02190at 504.084 kb on + strand, within CA264_02190at 504.084 kb on + strand, within CA264_02190at 504.084 kb on + strand, within CA264_02190at 504.085 kb on - strand, within CA264_02190at 504.085 kb on - strand, within CA264_02190at 504.085 kb on - strand, within CA264_02190at 504.085 kb on - strand, within CA264_02190at 504.142 kb on - strand, within CA264_02190at 504.142 kb on - strand, within CA264_02190at 504.160 kb on - strand, within CA264_02190at 504.162 kb on + strand, within CA264_02190at 504.283 kb on + strand, within CA264_02190at 504.283 kb on + strand, within CA264_02190at 504.283 kb on + strand, within CA264_02190at 504.335 kb on - strand, within CA264_02190at 504.335 kb on - strand, within CA264_02190at 504.343 kb on - strand, within CA264_02190at 504.356 kb on + strand, within CA264_02190at 504.356 kb on + strand, within CA264_02190at 504.357 kb on - strand, within CA264_02190at 504.382 kb on + strand, within CA264_02190at 504.383 kb on - strand, within CA264_02190at 504.410 kb on + strand, within CA264_02190at 504.520 kb on - strand, within CA264_02190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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502,129 + -0.9
502,129 + -1.1
502,129 + +0.7
502,130 - -0.4
502,130 - -0.4
502,130 - -0.4
502,130 - -0.3
502,135 - -0.1
502,135 - -0.2
502,135 - -0.5
502,135 - +0.7
502,242 + +1.2
502,243 - -0.5
502,245 - -0.5
502,245 - -1.0
502,250 - -0.2
502,250 - +0.9
502,463 - +0.4
502,471 + +1.3
502,472 - +1.0
502,472 - -0.0
502,474 + -0.9
502,474 + -0.4
502,474 + -1.5
502,474 + -1.7
502,475 - -0.4
502,476 + -0.3
502,476 + -0.1
502,476 + +0.2
502,476 + -1.1
502,476 + +0.0
502,476 + -0.2
502,477 - +0.4
502,477 - -1.7
502,477 - +0.1
502,534 - -1.1
502,543 + +0.2
502,544 - +0.9
502,544 - -1.0
502,544 - -0.2
502,572 + +0.4
502,616 + CA264_02180 0.19 -1.1
502,645 - CA264_02180 0.27 +0.0
502,831 + CA264_02180 0.77 -2.4
502,857 - CA264_02180 0.84 +0.2
502,889 + +1.2
502,889 + +0.6
502,890 - +0.2
502,913 - -0.3
502,932 + -0.7
502,933 - -0.4
502,967 + -1.3
503,031 - +0.1
503,031 - +0.2
503,042 + -0.2
503,043 - +0.3
503,155 + CA264_02185 0.16 -0.0
503,156 - CA264_02185 0.16 +1.4
503,189 - CA264_02185 0.22 +0.0
503,263 + CA264_02185 0.37 -0.3
503,304 - CA264_02185 0.44 +0.7
503,362 + CA264_02185 0.55 -0.1
503,426 - CA264_02185 0.68 -0.1
503,460 - CA264_02185 0.74 -0.1
503,658 - -0.6
503,672 - -0.6
503,680 - -0.6
503,712 + -1.8
503,712 + -1.4
503,713 - -0.7
503,713 - +1.1
503,713 - +0.3
503,713 - -1.3
503,713 - -0.4
503,717 + -0.2
503,718 - -0.3
503,719 + -0.1
503,719 + +0.2
503,720 - -0.8
503,784 - CA264_02190 0.10 -0.8
503,784 - CA264_02190 0.10 +1.0
503,784 - CA264_02190 0.10 +0.6
503,937 + CA264_02190 0.25 +1.9
503,937 + CA264_02190 0.25 +0.2
503,941 - CA264_02190 0.26 +0.3
503,992 + CA264_02190 0.31 +0.0
504,084 + CA264_02190 0.40 +0.5
504,084 + CA264_02190 0.40 +0.1
504,084 + CA264_02190 0.40 -0.3
504,085 - CA264_02190 0.40 -0.1
504,085 - CA264_02190 0.40 -0.9
504,085 - CA264_02190 0.40 -0.8
504,085 - CA264_02190 0.40 +0.4
504,142 - CA264_02190 0.46 -0.2
504,142 - CA264_02190 0.46 -0.4
504,160 - CA264_02190 0.48 +0.0
504,162 + CA264_02190 0.48 -0.5
504,283 + CA264_02190 0.60 +0.4
504,283 + CA264_02190 0.60 -0.9
504,283 + CA264_02190 0.60 +1.0
504,335 - CA264_02190 0.66 +0.5
504,335 - CA264_02190 0.66 -0.2
504,343 - CA264_02190 0.66 +0.4
504,356 + CA264_02190 0.68 -0.4
504,356 + CA264_02190 0.68 +0.1
504,357 - CA264_02190 0.68 +1.1
504,382 + CA264_02190 0.70 +1.3
504,383 - CA264_02190 0.71 +0.1
504,410 + CA264_02190 0.73 +1.1
504,520 - CA264_02190 0.84 +0.6

Or see this region's nucleotide sequence