Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00855

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00850 and CA264_00855 are separated by 2 nucleotidesCA264_00855 and CA264_00860 are separated by 305 nucleotides CA264_00850: CA264_00850 - site-specific tyrosine recombinase XerD, at 180,708 to 181,607 _00850 CA264_00855: CA264_00855 - RNA helicase, at 181,610 to 182,752 _00855 CA264_00860: CA264_00860 - CPBP family intramembrane metalloprotease, at 183,058 to 183,930 _00860 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.617 kb on - strandat 180.628 kb on - strandat 180.641 kb on + strandat 180.646 kb on - strandat 180.647 kb on + strandat 180.647 kb on + strandat 180.651 kb on + strandat 180.675 kb on + strandat 180.676 kb on - strandat 180.682 kb on + strandat 180.683 kb on - strandat 180.726 kb on - strandat 180.728 kb on - strandat 181.612 kb on - strandat 181.628 kb on + strandat 181.629 kb on - strandat 181.629 kb on - strandat 181.770 kb on + strand, within CA264_00855at 181.770 kb on + strand, within CA264_00855at 181.770 kb on + strand, within CA264_00855at 181.770 kb on + strand, within CA264_00855at 181.771 kb on - strand, within CA264_00855at 181.797 kb on + strand, within CA264_00855at 181.798 kb on - strand, within CA264_00855at 182.082 kb on + strand, within CA264_00855at 182.083 kb on - strand, within CA264_00855at 182.237 kb on + strand, within CA264_00855at 182.258 kb on - strand, within CA264_00855at 182.307 kb on - strand, within CA264_00855at 182.373 kb on - strand, within CA264_00855at 182.373 kb on - strand, within CA264_00855at 182.373 kb on - strand, within CA264_00855at 182.408 kb on + strand, within CA264_00855at 182.411 kb on - strand, within CA264_00855at 182.426 kb on + strand, within CA264_00855at 182.519 kb on + strand, within CA264_00855at 182.519 kb on + strand, within CA264_00855at 182.520 kb on - strand, within CA264_00855at 182.520 kb on - strand, within CA264_00855at 182.521 kb on + strand, within CA264_00855at 182.521 kb on + strand, within CA264_00855at 182.521 kb on + strand, within CA264_00855at 182.522 kb on - strand, within CA264_00855at 182.522 kb on - strand, within CA264_00855at 182.531 kb on + strand, within CA264_00855at 182.574 kb on - strand, within CA264_00855at 182.574 kb on - strand, within CA264_00855at 182.630 kb on + strand, within CA264_00855at 182.714 kb on + strandat 182.714 kb on + strandat 182.752 kb on + strandat 182.753 kb on - strandat 182.754 kb on + strandat 182.755 kb on - strandat 182.755 kb on - strandat 182.755 kb on - strandat 182.755 kb on - strandat 182.763 kb on - strandat 182.763 kb on - strandat 182.763 kb on - strandat 182.775 kb on + strandat 182.775 kb on + strandat 182.777 kb on + strandat 182.777 kb on + strandat 182.778 kb on - strandat 182.779 kb on + strandat 182.795 kb on - strandat 182.835 kb on + strandat 182.835 kb on + strandat 182.845 kb on - strandat 182.945 kb on + strandat 182.955 kb on + strandat 182.956 kb on - strandat 182.956 kb on - strandat 182.956 kb on - strandat 182.958 kb on + strandat 182.959 kb on + strandat 182.975 kb on - strandat 183.034 kb on + strandat 183.034 kb on + strandat 183.034 kb on + strandat 183.041 kb on - strandat 183.072 kb on + strandat 183.119 kb on - strandat 183.236 kb on + strand, within CA264_00860at 183.251 kb on - strand, within CA264_00860at 183.251 kb on - strand, within CA264_00860at 183.255 kb on + strand, within CA264_00860at 183.256 kb on - strand, within CA264_00860at 183.281 kb on - strand, within CA264_00860at 183.302 kb on + strand, within CA264_00860at 183.303 kb on - strand, within CA264_00860at 183.347 kb on + strand, within CA264_00860at 183.347 kb on + strand, within CA264_00860at 183.355 kb on + strand, within CA264_00860at 183.385 kb on - strand, within CA264_00860at 183.385 kb on - strand, within CA264_00860at 183.385 kb on - strand, within CA264_00860at 183.386 kb on + strand, within CA264_00860at 183.386 kb on + strand, within CA264_00860at 183.387 kb on - strand, within CA264_00860at 183.398 kb on + strand, within CA264_00860at 183.398 kb on + strand, within CA264_00860at 183.437 kb on + strand, within CA264_00860at 183.516 kb on - strand, within CA264_00860at 183.524 kb on + strand, within CA264_00860at 183.525 kb on - strand, within CA264_00860at 183.525 kb on - strand, within CA264_00860at 183.562 kb on - strand, within CA264_00860at 183.562 kb on - strand, within CA264_00860at 183.612 kb on + strand, within CA264_00860at 183.676 kb on + strand, within CA264_00860at 183.677 kb on - strand, within CA264_00860at 183.677 kb on - strand, within CA264_00860at 183.680 kb on - strand, within CA264_00860at 183.722 kb on + strand, within CA264_00860at 183.745 kb on - strand, within CA264_00860at 183.749 kb on + strand, within CA264_00860at 183.749 kb on + strand, within CA264_00860at 183.750 kb on - strand, within CA264_00860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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180,617 - -1.3
180,628 - -0.1
180,641 + +0.1
180,646 - -0.3
180,647 + -0.1
180,647 + +0.8
180,651 + +0.4
180,675 + -0.5
180,676 - +0.2
180,682 + +0.4
180,683 - +0.8
180,726 - +0.2
180,728 - -0.7
181,612 - +0.8
181,628 + -0.9
181,629 - -0.0
181,629 - -0.2
181,770 + CA264_00855 0.14 +0.2
181,770 + CA264_00855 0.14 -0.1
181,770 + CA264_00855 0.14 -0.9
181,770 + CA264_00855 0.14 -1.0
181,771 - CA264_00855 0.14 +0.1
181,797 + CA264_00855 0.16 -1.0
181,798 - CA264_00855 0.16 -0.3
182,082 + CA264_00855 0.41 +0.8
182,083 - CA264_00855 0.41 -0.3
182,237 + CA264_00855 0.55 +0.4
182,258 - CA264_00855 0.57 -0.3
182,307 - CA264_00855 0.61 -0.7
182,373 - CA264_00855 0.67 -0.3
182,373 - CA264_00855 0.67 -0.7
182,373 - CA264_00855 0.67 +0.2
182,408 + CA264_00855 0.70 -0.5
182,411 - CA264_00855 0.70 -1.1
182,426 + CA264_00855 0.71 -0.9
182,519 + CA264_00855 0.80 -0.2
182,519 + CA264_00855 0.80 +0.3
182,520 - CA264_00855 0.80 -0.1
182,520 - CA264_00855 0.80 -1.0
182,521 + CA264_00855 0.80 +2.3
182,521 + CA264_00855 0.80 -1.2
182,521 + CA264_00855 0.80 -0.6
182,522 - CA264_00855 0.80 +0.2
182,522 - CA264_00855 0.80 -0.0
182,531 + CA264_00855 0.81 -0.3
182,574 - CA264_00855 0.84 -0.5
182,574 - CA264_00855 0.84 -0.4
182,630 + CA264_00855 0.89 +1.6
182,714 + -0.5
182,714 + -1.5
182,752 + +0.0
182,753 - -0.2
182,754 + +0.1
182,755 - -0.7
182,755 - +1.3
182,755 - -0.7
182,755 - +0.0
182,763 - -0.4
182,763 - -0.0
182,763 - -0.2
182,775 + +0.8
182,775 + +0.2
182,777 + -0.0
182,777 + +0.0
182,778 - -0.9
182,779 + +0.0
182,795 - +0.5
182,835 + +0.5
182,835 + -0.8
182,845 - +1.5
182,945 + +0.2
182,955 + -0.2
182,956 - -2.9
182,956 - +0.3
182,956 - -0.3
182,958 + +0.1
182,959 + -0.5
182,975 - -0.0
183,034 + +1.1
183,034 + +0.2
183,034 + -1.2
183,041 - -0.3
183,072 + +0.5
183,119 - +0.8
183,236 + CA264_00860 0.20 +1.5
183,251 - CA264_00860 0.22 -0.2
183,251 - CA264_00860 0.22 -1.0
183,255 + CA264_00860 0.23 +0.4
183,256 - CA264_00860 0.23 -0.2
183,281 - CA264_00860 0.26 +0.5
183,302 + CA264_00860 0.28 -1.5
183,303 - CA264_00860 0.28 -0.9
183,347 + CA264_00860 0.33 -0.0
183,347 + CA264_00860 0.33 -0.2
183,355 + CA264_00860 0.34 +0.3
183,385 - CA264_00860 0.37 +1.5
183,385 - CA264_00860 0.37 +0.6
183,385 - CA264_00860 0.37 -1.4
183,386 + CA264_00860 0.38 +1.1
183,386 + CA264_00860 0.38 -1.9
183,387 - CA264_00860 0.38 +0.1
183,398 + CA264_00860 0.39 -0.8
183,398 + CA264_00860 0.39 -0.3
183,437 + CA264_00860 0.43 -1.5
183,516 - CA264_00860 0.52 -1.4
183,524 + CA264_00860 0.53 +0.0
183,525 - CA264_00860 0.53 -1.0
183,525 - CA264_00860 0.53 +0.7
183,562 - CA264_00860 0.58 -0.3
183,562 - CA264_00860 0.58 -0.6
183,612 + CA264_00860 0.63 -0.9
183,676 + CA264_00860 0.71 -0.8
183,677 - CA264_00860 0.71 +0.3
183,677 - CA264_00860 0.71 +0.3
183,680 - CA264_00860 0.71 -0.9
183,722 + CA264_00860 0.76 -0.4
183,745 - CA264_00860 0.79 -0.4
183,749 + CA264_00860 0.79 -0.0
183,749 + CA264_00860 0.79 +0.3
183,750 - CA264_00860 0.79 +0.2

Or see this region's nucleotide sequence