Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00840

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00830 and CA264_00835 are separated by 205 nucleotidesCA264_00835 and CA264_00840 are separated by 84 nucleotidesCA264_00840 and CA264_00845 are separated by 86 nucleotidesCA264_00845 and CA264_00850 are separated by 171 nucleotides CA264_00830: CA264_00830 - ribonuclease HI, at 177,621 to 178,091 _00830 CA264_00835: CA264_00835 - hypothetical protein, at 178,297 to 178,857 _00835 CA264_00840: CA264_00840 - phosphoserine aminotransferase, at 178,942 to 180,003 _00840 CA264_00845: CA264_00845 - type II 3-dehydroquinate dehydratase, at 180,090 to 180,536 _00845 CA264_00850: CA264_00850 - site-specific tyrosine recombinase XerD, at 180,708 to 181,607 _00850 Position (kb) 178 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 178.081 kb on - strandat 178.081 kb on - strandat 178.123 kb on + strandat 178.161 kb on + strandat 178.162 kb on - strandat 178.170 kb on + strandat 178.170 kb on + strandat 178.170 kb on + strandat 178.170 kb on + strandat 178.171 kb on - strandat 178.177 kb on - strandat 178.198 kb on + strandat 178.199 kb on - strandat 178.215 kb on + strandat 178.259 kb on - strandat 178.291 kb on + strandat 178.301 kb on - strandat 178.414 kb on + strand, within CA264_00835at 178.418 kb on - strand, within CA264_00835at 178.425 kb on - strand, within CA264_00835at 178.454 kb on - strand, within CA264_00835at 178.456 kb on + strand, within CA264_00835at 178.457 kb on - strand, within CA264_00835at 178.457 kb on - strand, within CA264_00835at 178.475 kb on + strand, within CA264_00835at 178.623 kb on + strand, within CA264_00835at 178.623 kb on + strand, within CA264_00835at 178.800 kb on + strand, within CA264_00835at 178.847 kb on - strandat 178.883 kb on + strandat 178.883 kb on + strandat 178.929 kb on + strandat 178.929 kb on + strandat 178.930 kb on - strandat 178.930 kb on - strandat 178.932 kb on - strandat 178.938 kb on + strandat 178.938 kb on + strandat 178.939 kb on - strandat 178.939 kb on - strandat 178.939 kb on - strandat 178.939 kb on - strandat 178.940 kb on + strandat 180.004 kb on - strandat 180.004 kb on - strandat 180.029 kb on - strandat 180.064 kb on + strandat 180.064 kb on + strandat 180.067 kb on + strandat 180.067 kb on + strandat 180.067 kb on + strandat 180.068 kb on - strandat 180.068 kb on - strandat 180.092 kb on - strandat 180.548 kb on + strandat 180.565 kb on + strandat 180.565 kb on + strandat 180.574 kb on - strandat 180.585 kb on - strandat 180.617 kb on - strandat 180.628 kb on - strandat 180.641 kb on + strandat 180.646 kb on - strandat 180.647 kb on + strandat 180.647 kb on + strandat 180.651 kb on + strandat 180.675 kb on + strandat 180.676 kb on - strandat 180.682 kb on + strandat 180.683 kb on - strandat 180.726 kb on - strandat 180.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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178,081 - -0.3
178,081 - +0.4
178,123 + +0.4
178,161 + +0.3
178,162 - +0.5
178,170 + +0.9
178,170 + +0.3
178,170 + +0.3
178,170 + -0.9
178,171 - +0.9
178,177 - -0.2
178,198 + +2.2
178,199 - -0.3
178,215 + +0.2
178,259 - +0.5
178,291 + -0.4
178,301 - +0.9
178,414 + CA264_00835 0.21 -0.4
178,418 - CA264_00835 0.22 -0.5
178,425 - CA264_00835 0.23 +0.7
178,454 - CA264_00835 0.28 +1.0
178,456 + CA264_00835 0.28 +0.8
178,457 - CA264_00835 0.29 +0.3
178,457 - CA264_00835 0.29 +0.7
178,475 + CA264_00835 0.32 +0.9
178,623 + CA264_00835 0.58 +1.3
178,623 + CA264_00835 0.58 -0.0
178,800 + CA264_00835 0.90 +0.7
178,847 - -0.8
178,883 + -0.6
178,883 + -0.5
178,929 + -2.0
178,929 + -0.8
178,930 - -0.9
178,930 - +0.2
178,932 - +0.1
178,938 + -1.5
178,938 + -0.1
178,939 - -0.1
178,939 - -0.2
178,939 - -0.2
178,939 - +0.3
178,940 + -0.0
180,004 - +0.6
180,004 - +1.0
180,029 - +0.1
180,064 + -0.2
180,064 + -1.0
180,067 + -0.4
180,067 + +0.6
180,067 + +0.6
180,068 - -0.3
180,068 - -1.9
180,092 - +0.3
180,548 + -0.1
180,565 + -0.2
180,565 + +0.3
180,574 - +0.0
180,585 - -0.2
180,617 - -1.3
180,628 - -0.1
180,641 + +0.1
180,646 - -0.3
180,647 + -0.1
180,647 + +0.8
180,651 + +0.4
180,675 + -0.5
180,676 - +0.2
180,682 + +0.4
180,683 - +0.8
180,726 - +0.2
180,728 - -0.7

Or see this region's nucleotide sequence