Experiment: 5-Aminovaleric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3343 and Atu3344 are separated by 33 nucleotides Atu3344 and Atu3345 overlap by 4 nucleotides Atu3345 and Atu3346 overlap by 1 nucleotides
Atu3343: Atu3343 - trehalose utilization-like protein, at 377,500 to 378,549
Atu3343
Atu3344: Atu3344 - radical activating protein, at 378,583 to 379,338
Atu3344
Atu3345: Atu3345 - 6-pyruvoyl tetrahydrobiopterin synthase, at 379,335 to 379,691
Atu3345
Atu3346: Atu3346 - succinoglycan biosynthesis regulator, at 379,691 to 380,401
Atu3346
Position (kb) 378
379
380 Strain fitness (log2 ratio) -1
0
1
2 at 377.618 kb on + strand, within Atu3343 at 377.654 kb on - strand, within Atu3343 at 377.858 kb on - strand, within Atu3343 at 377.894 kb on - strand, within Atu3343 at 377.958 kb on - strand, within Atu3343 at 378.025 kb on + strand, within Atu3343 at 378.075 kb on - strand, within Atu3343 at 378.123 kb on + strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.251 kb on - strand, within Atu3343 at 378.269 kb on + strand, within Atu3343 at 378.273 kb on + strand, within Atu3343 at 378.299 kb on - strand, within Atu3343 at 378.329 kb on + strand, within Atu3343 at 378.514 kb on + strand at 378.602 kb on + strand at 378.602 kb on + strand at 378.602 kb on + strand at 378.670 kb on - strand, within Atu3344 at 378.696 kb on - strand, within Atu3344 at 378.712 kb on - strand, within Atu3344 at 378.764 kb on - strand, within Atu3344 at 378.857 kb on - strand, within Atu3344 at 378.880 kb on + strand, within Atu3344 at 378.882 kb on + strand, within Atu3344 at 379.006 kb on + strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.110 kb on - strand, within Atu3344 at 379.161 kb on - strand, within Atu3344 at 379.189 kb on - strand, within Atu3344 at 379.287 kb on - strand at 379.321 kb on - strand at 379.365 kb on - strand at 379.462 kb on - strand, within Atu3345 at 379.542 kb on + strand, within Atu3345 at 379.595 kb on + strand, within Atu3345 at 379.639 kb on + strand, within Atu3345 at 379.710 kb on + strand at 379.710 kb on + strand at 379.710 kb on + strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.723 kb on - strand at 379.923 kb on - strand, within Atu3346 at 379.923 kb on - strand, within Atu3346 at 379.936 kb on + strand, within Atu3346 at 379.944 kb on - strand, within Atu3346 at 379.960 kb on - strand, within Atu3346 at 379.967 kb on + strand, within Atu3346 at 379.992 kb on + strand, within Atu3346 at 380.080 kb on + strand, within Atu3346 at 380.201 kb on - strand, within Atu3346 at 380.326 kb on - strand, within Atu3346
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (N) remove 377,618 + Atu3343 0.11 +0.7 377,654 - Atu3343 0.15 +0.7 377,858 - Atu3343 0.34 -0.1 377,894 - Atu3343 0.38 +0.7 377,958 - Atu3343 0.44 +1.8 378,025 + Atu3343 0.50 -0.7 378,075 - Atu3343 0.55 +0.2 378,123 + Atu3343 0.59 +0.3 378,131 - Atu3343 0.60 +0.8 378,131 - Atu3343 0.60 +0.7 378,251 - Atu3343 0.72 +0.1 378,269 + Atu3343 0.73 -1.0 378,273 + Atu3343 0.74 -0.1 378,299 - Atu3343 0.76 +0.4 378,329 + Atu3343 0.79 +0.2 378,514 + +0.5 378,602 + -1.2 378,602 + -0.2 378,602 + +1.3 378,670 - Atu3344 0.12 +0.2 378,696 - Atu3344 0.15 +0.5 378,712 - Atu3344 0.17 +0.1 378,764 - Atu3344 0.24 +0.6 378,857 - Atu3344 0.36 +0.3 378,880 + Atu3344 0.39 +2.0 378,882 + Atu3344 0.40 +0.2 379,006 + Atu3344 0.56 +0.6 379,014 - Atu3344 0.57 +0.3 379,014 - Atu3344 0.57 +1.2 379,014 - Atu3344 0.57 +0.4 379,110 - Atu3344 0.70 +0.8 379,161 - Atu3344 0.76 +0.1 379,189 - Atu3344 0.80 +0.6 379,287 - -0.3 379,321 - +0.5 379,365 - +0.9 379,462 - Atu3345 0.36 -0.0 379,542 + Atu3345 0.58 +1.0 379,595 + Atu3345 0.73 -1.1 379,639 + Atu3345 0.85 +0.6 379,710 + -1.1 379,710 + +0.2 379,710 + -0.5 379,718 - +0.2 379,718 - +0.4 379,718 - +0.1 379,723 - -0.3 379,923 - Atu3346 0.33 +0.6 379,923 - Atu3346 0.33 +0.0 379,936 + Atu3346 0.34 -0.6 379,944 - Atu3346 0.36 +0.3 379,960 - Atu3346 0.38 +0.4 379,967 + Atu3346 0.39 -0.1 379,992 + Atu3346 0.42 +0.3 380,080 + Atu3346 0.55 +0.1 380,201 - Atu3346 0.72 +0.3 380,326 - Atu3346 0.89 -0.2
Or see this region's nucleotide sequence