Experiment: protonated control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaE and cof are separated by 99 nucleotides cof and ybaO are separated by 152 nucleotides ybaO and mdlA are separated by 29 nucleotides
b0445: ybaE - predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 464,836 to 466,536
ybaE
b0446: cof - orf, hypothetical protein (VIMSS), at 466,636 to 467,454
cof
b0447: ybaO - putative LRP-like transcriptional regulator (VIMSS), at 467,607 to 468,065
ybaO
b0448: mdlA - fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 468,095 to 469,867
mdlA
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 465.643 kb on - strand, within ybaE at 465.667 kb on + strand, within ybaE at 465.818 kb on - strand, within ybaE at 465.863 kb on - strand, within ybaE at 465.924 kb on + strand, within ybaE at 465.937 kb on + strand, within ybaE at 465.961 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.972 kb on - strand, within ybaE at 466.029 kb on + strand, within ybaE at 466.060 kb on - strand, within ybaE at 466.102 kb on + strand, within ybaE at 466.102 kb on + strand, within ybaE at 466.138 kb on - strand, within ybaE at 466.138 kb on - strand, within ybaE at 466.145 kb on + strand, within ybaE at 466.168 kb on + strand, within ybaE at 466.260 kb on + strand, within ybaE at 466.260 kb on + strand, within ybaE at 466.289 kb on - strand, within ybaE at 466.419 kb on - strand at 466.471 kb on - strand at 466.471 kb on - strand at 466.500 kb on + strand at 466.508 kb on - strand at 466.508 kb on - strand at 466.613 kb on - strand at 466.613 kb on - strand at 466.613 kb on - strand at 466.624 kb on - strand at 466.774 kb on - strand, within cof at 466.903 kb on - strand, within cof at 466.913 kb on + strand, within cof at 466.913 kb on + strand, within cof at 466.923 kb on + strand, within cof at 467.055 kb on + strand, within cof at 467.055 kb on + strand, within cof at 467.096 kb on + strand, within cof at 467.106 kb on + strand, within cof at 467.209 kb on + strand, within cof at 467.209 kb on + strand, within cof at 467.226 kb on - strand, within cof at 467.250 kb on + strand, within cof at 467.260 kb on + strand, within cof at 467.260 kb on + strand, within cof at 467.268 kb on - strand, within cof at 467.335 kb on + strand, within cof at 467.350 kb on + strand, within cof at 467.354 kb on - strand, within cof at 467.354 kb on - strand, within cof at 467.426 kb on + strand at 467.426 kb on + strand at 467.454 kb on + strand at 467.454 kb on + strand at 467.472 kb on - strand at 467.472 kb on - strand at 467.472 kb on - strand at 467.532 kb on - strand at 467.646 kb on + strand at 467.663 kb on + strand, within ybaO at 467.663 kb on + strand, within ybaO at 467.673 kb on - strand, within ybaO at 467.851 kb on - strand, within ybaO at 467.851 kb on - strand, within ybaO at 467.910 kb on + strand, within ybaO at 467.910 kb on + strand, within ybaO at 467.910 kb on - strand, within ybaO at 467.918 kb on - strand, within ybaO at 467.929 kb on + strand, within ybaO at 467.929 kb on + strand, within ybaO at 467.951 kb on - strand, within ybaO at 467.976 kb on + strand, within ybaO at 468.054 kb on - strand at 468.129 kb on - strand at 468.187 kb on + strand at 468.226 kb on - strand at 468.231 kb on + strand at 468.252 kb on - strand at 468.356 kb on - strand, within mdlA at 468.397 kb on - strand, within mdlA at 468.448 kb on - strand, within mdlA
Per-strain Table
Position Strand Gene LocusTag Fraction protonated control remove 465,643 - ybaE b0445 0.47 +0.6 465,667 + ybaE b0445 0.49 +0.1 465,818 - ybaE b0445 0.58 +0.6 465,863 - ybaE b0445 0.60 -0.6 465,924 + ybaE b0445 0.64 +0.3 465,937 + ybaE b0445 0.65 +0.4 465,961 + ybaE b0445 0.66 -0.5 465,964 + ybaE b0445 0.66 -1.1 465,964 + ybaE b0445 0.66 +1.0 465,964 + ybaE b0445 0.66 +0.3 465,964 + ybaE b0445 0.66 -0.5 465,972 - ybaE b0445 0.67 -0.3 466,029 + ybaE b0445 0.70 +0.1 466,060 - ybaE b0445 0.72 -0.1 466,102 + ybaE b0445 0.74 -0.8 466,102 + ybaE b0445 0.74 -0.6 466,138 - ybaE b0445 0.77 +0.5 466,138 - ybaE b0445 0.77 +0.7 466,145 + ybaE b0445 0.77 -1.5 466,168 + ybaE b0445 0.78 +0.2 466,260 + ybaE b0445 0.84 +0.2 466,260 + ybaE b0445 0.84 +1.8 466,289 - ybaE b0445 0.85 +0.6 466,419 - +0.6 466,471 - -0.5 466,471 - +1.1 466,500 + -0.1 466,508 - +0.4 466,508 - -0.1 466,613 - +0.6 466,613 - +1.2 466,613 - +0.2 466,624 - +0.3 466,774 - cof b0446 0.17 +0.2 466,903 - cof b0446 0.33 -0.2 466,913 + cof b0446 0.34 +1.8 466,913 + cof b0446 0.34 -0.9 466,923 + cof b0446 0.35 -0.6 467,055 + cof b0446 0.51 -0.1 467,055 + cof b0446 0.51 +0.6 467,096 + cof b0446 0.56 +0.2 467,106 + cof b0446 0.57 +0.1 467,209 + cof b0446 0.70 -0.9 467,209 + cof b0446 0.70 -0.0 467,226 - cof b0446 0.72 +0.1 467,250 + cof b0446 0.75 -1.1 467,260 + cof b0446 0.76 -2.4 467,260 + cof b0446 0.76 +0.4 467,268 - cof b0446 0.77 -0.8 467,335 + cof b0446 0.85 -0.1 467,350 + cof b0446 0.87 -0.4 467,354 - cof b0446 0.88 -1.2 467,354 - cof b0446 0.88 -0.9 467,426 + -0.3 467,426 + -0.3 467,454 + +0.1 467,454 + +0.8 467,472 - +0.2 467,472 - -1.2 467,472 - -0.5 467,532 - -0.5 467,646 + +0.0 467,663 + ybaO b0447 0.12 +0.1 467,663 + ybaO b0447 0.12 -0.8 467,673 - ybaO b0447 0.14 +2.8 467,851 - ybaO b0447 0.53 -0.1 467,851 - ybaO b0447 0.53 +1.8 467,910 + ybaO b0447 0.66 +0.9 467,910 + ybaO b0447 0.66 +1.1 467,910 - ybaO b0447 0.66 -0.2 467,918 - ybaO b0447 0.68 -1.7 467,929 + ybaO b0447 0.70 +0.2 467,929 + ybaO b0447 0.70 +0.4 467,951 - ybaO b0447 0.75 -0.1 467,976 + ybaO b0447 0.80 +0.5 468,054 - +0.7 468,129 - -0.9 468,187 + +0.1 468,226 - +0.1 468,231 + -0.6 468,252 - -0.2 468,356 - mdlA b0448 0.15 -0.4 468,397 - mdlA b0448 0.17 +0.2 468,448 - mdlA b0448 0.20 +1.2
Or see this region's nucleotide sequence