Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24470 and PS417_24475 are separated by 48 nucleotides PS417_24475 and PS417_24480 overlap by 4 nucleotides PS417_24480 and PS417_24485 are separated by 38 nucleotides
PS417_24470: PS417_24470 - hypothetical protein, at 5,311,962 to 5,312,933
_24470
PS417_24475: PS417_24475 - HAD family hydrolase, at 5,312,982 to 5,313,569
_24475
PS417_24480: PS417_24480 - palmitoyl-CoA hydrolase, at 5,313,566 to 5,314,435
_24480
PS417_24485: PS417_24485 - GNAT family acetyltransferase, at 5,314,474 to 5,315,043
_24485
Position (kb) 5312
5313
5314 Strain fitness (log2 ratio) -1
0
1
2 at 5312.032 kb on + strand at 5312.173 kb on - strand, within PS417_24470 at 5312.173 kb on - strand, within PS417_24470 at 5312.405 kb on - strand, within PS417_24470 at 5312.527 kb on - strand, within PS417_24470 at 5312.527 kb on - strand, within PS417_24470 at 5312.556 kb on + strand, within PS417_24470 at 5312.557 kb on - strand, within PS417_24470 at 5312.557 kb on - strand, within PS417_24470 at 5312.557 kb on - strand, within PS417_24470 at 5312.685 kb on + strand, within PS417_24470 at 5312.685 kb on + strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.808 kb on + strand, within PS417_24470 at 5312.808 kb on + strand at 5312.809 kb on - strand, within PS417_24470 at 5312.809 kb on - strand, within PS417_24470 at 5312.817 kb on + strand, within PS417_24470 at 5312.897 kb on + strand at 5312.897 kb on + strand at 5312.898 kb on - strand at 5312.920 kb on + strand at 5312.921 kb on - strand at 5312.921 kb on - strand at 5312.921 kb on - strand at 5312.983 kb on + strand at 5312.983 kb on + strand at 5312.983 kb on + strand at 5313.552 kb on + strand at 5313.553 kb on - strand at 5313.639 kb on + strand at 5313.640 kb on - strand at 5313.697 kb on - strand, within PS417_24480 at 5313.766 kb on + strand, within PS417_24480 at 5313.767 kb on - strand, within PS417_24480 at 5313.847 kb on - strand, within PS417_24480 at 5313.847 kb on - strand at 5313.900 kb on + strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.995 kb on - strand, within PS417_24480 at 5313.995 kb on - strand, within PS417_24480 at 5314.108 kb on - strand, within PS417_24480 at 5314.210 kb on - strand, within PS417_24480 at 5314.249 kb on - strand, within PS417_24480 at 5314.249 kb on - strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.284 kb on - strand, within PS417_24480 at 5314.284 kb on - strand, within PS417_24480 at 5314.424 kb on + strand at 5314.424 kb on + strand at 5314.436 kb on - strand at 5314.436 kb on - strand at 5314.436 kb on - strand at 5314.454 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,312,032 + +0.6 5,312,173 - PS417_24470 0.22 +0.1 5,312,173 - PS417_24470 0.22 +0.4 5,312,405 - PS417_24470 0.46 +1.1 5,312,527 - PS417_24470 0.58 -0.0 5,312,527 - PS417_24470 0.58 -0.4 5,312,556 + PS417_24470 0.61 +0.3 5,312,557 - PS417_24470 0.61 +0.1 5,312,557 - PS417_24470 0.61 +0.1 5,312,557 - PS417_24470 0.61 +0.0 5,312,685 + PS417_24470 0.74 +1.5 5,312,685 + PS417_24470 0.74 +1.4 5,312,686 - PS417_24470 0.74 -0.4 5,312,686 - PS417_24470 0.74 +0.1 5,312,686 - PS417_24470 0.74 +0.4 5,312,686 - PS417_24470 0.74 +0.1 5,312,686 - PS417_24470 0.74 +1.4 5,312,686 - PS417_24470 0.74 +0.0 5,312,686 - PS417_24470 0.74 -0.1 5,312,686 - PS417_24470 0.74 -0.1 5,312,686 - PS417_24470 0.74 -0.2 5,312,707 - PS417_24470 0.77 -0.3 5,312,707 - PS417_24470 0.77 +0.7 5,312,808 + PS417_24470 0.87 -1.6 5,312,808 + +0.4 5,312,809 - PS417_24470 0.87 -0.6 5,312,809 - PS417_24470 0.87 -0.5 5,312,817 + PS417_24470 0.88 -1.3 5,312,897 + +0.1 5,312,897 + +0.2 5,312,898 - +0.1 5,312,920 + +1.1 5,312,921 - +0.6 5,312,921 - +0.0 5,312,921 - -0.0 5,312,983 + -0.9 5,312,983 + -0.2 5,312,983 + -0.4 5,313,552 + -0.3 5,313,553 - +0.3 5,313,639 + +2.1 5,313,640 - +0.6 5,313,697 - PS417_24480 0.15 -1.1 5,313,766 + PS417_24480 0.23 +0.7 5,313,767 - PS417_24480 0.23 +0.7 5,313,847 - PS417_24480 0.32 +0.1 5,313,847 - -1.2 5,313,900 + PS417_24480 0.38 +0.1 5,313,901 - PS417_24480 0.39 -0.3 5,313,901 - PS417_24480 0.39 +0.1 5,313,901 - PS417_24480 0.39 -0.3 5,313,995 - PS417_24480 0.49 -0.6 5,313,995 - PS417_24480 0.49 +0.3 5,314,108 - PS417_24480 0.62 -0.0 5,314,210 - PS417_24480 0.74 -0.4 5,314,249 - PS417_24480 0.79 +1.4 5,314,249 - PS417_24480 0.79 +0.2 5,314,283 + PS417_24480 0.82 +0.8 5,314,283 + PS417_24480 0.82 -1.5 5,314,283 + PS417_24480 0.82 +0.1 5,314,284 - PS417_24480 0.83 -0.6 5,314,284 - PS417_24480 0.83 -0.8 5,314,424 + -0.0 5,314,424 + -0.6 5,314,436 - +0.9 5,314,436 - -0.2 5,314,436 - +0.8 5,314,454 + -1.4
Or see this region's nucleotide sequence