Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23000 and PS417_23005 are separated by 71 nucleotides PS417_23005 and PS417_23015 are separated by 550 nucleotides PS417_23015 and PS417_23020 are separated by 4 nucleotides
PS417_23000: PS417_23000 - PTS N-acetyl-D-glucosamine transporter, at 4,981,506 to 4,983,212
_23000
PS417_23005: PS417_23005 - XRE family transcriptional regulator, at 4,983,284 to 4,983,571
_23005
PS417_23015: PS417_23015 - NGG1p interacting factor 3 protein, NIF3, at 4,984,122 to 4,984,433
_23015
PS417_23020: PS417_23020 - phosphoribosylformylglycinamidine synthase, at 4,984,438 to 4,988,334
_23020
Position (kb) 4983
4984 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4982.435 kb on + strand, within PS417_23000 at 4982.435 kb on + strand, within PS417_23000 at 4982.435 kb on + strand, within PS417_23000 at 4982.436 kb on - strand, within PS417_23000 at 4982.436 kb on - strand, within PS417_23000 at 4982.436 kb on - strand, within PS417_23000 at 4982.460 kb on - strand, within PS417_23000 at 4982.544 kb on + strand, within PS417_23000 at 4982.556 kb on + strand, within PS417_23000 at 4982.557 kb on - strand, within PS417_23000 at 4982.557 kb on - strand, within PS417_23000 at 4982.559 kb on + strand, within PS417_23000 at 4982.559 kb on + strand, within PS417_23000 at 4982.574 kb on + strand, within PS417_23000 at 4982.575 kb on - strand, within PS417_23000 at 4982.670 kb on + strand, within PS417_23000 at 4982.670 kb on + strand, within PS417_23000 at 4982.858 kb on + strand, within PS417_23000 at 4982.858 kb on + strand, within PS417_23000 at 4982.911 kb on + strand, within PS417_23000 at 4983.325 kb on + strand, within PS417_23005 at 4983.325 kb on + strand, within PS417_23005 at 4983.326 kb on - strand, within PS417_23005 at 4983.348 kb on + strand, within PS417_23005 at 4983.520 kb on + strand, within PS417_23005 at 4983.536 kb on + strand, within PS417_23005 at 4983.629 kb on + strand at 4983.629 kb on + strand at 4983.629 kb on + strand at 4983.629 kb on + strand at 4983.630 kb on - strand at 4983.630 kb on - strand at 4983.630 kb on - strand at 4983.654 kb on + strand at 4983.754 kb on + strand at 4983.825 kb on - strand at 4983.842 kb on + strand at 4983.843 kb on - strand at 4983.907 kb on + strand at 4983.931 kb on + strand at 4983.932 kb on - strand at 4983.932 kb on - strand at 4984.110 kb on - strand at 4984.150 kb on + strand at 4984.166 kb on - strand, within PS417_23015 at 4984.166 kb on - strand, within PS417_23015 at 4984.342 kb on + strand, within PS417_23015 at 4984.343 kb on - strand, within PS417_23015 at 4984.429 kb on + strand at 4984.430 kb on - strand at 4984.439 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,982,435 + PS417_23000 0.54 -5.6 4,982,435 + PS417_23000 0.54 +0.1 4,982,435 + PS417_23000 0.54 -2.4 4,982,436 - PS417_23000 0.54 -0.4 4,982,436 - PS417_23000 0.54 -5.3 4,982,436 - PS417_23000 0.54 -4.2 4,982,460 - PS417_23000 0.56 -2.4 4,982,544 + PS417_23000 0.61 -5.4 4,982,556 + PS417_23000 0.62 -5.4 4,982,557 - PS417_23000 0.62 -1.6 4,982,557 - PS417_23000 0.62 -2.3 4,982,559 + PS417_23000 0.62 -4.8 4,982,559 + PS417_23000 0.62 -2.6 4,982,574 + PS417_23000 0.63 -0.8 4,982,575 - PS417_23000 0.63 -2.1 4,982,670 + PS417_23000 0.68 -4.7 4,982,670 + PS417_23000 0.68 +0.9 4,982,858 + PS417_23000 0.79 -1.1 4,982,858 + PS417_23000 0.79 -3.9 4,982,911 + PS417_23000 0.82 -3.5 4,983,325 + PS417_23005 0.14 -0.6 4,983,325 + PS417_23005 0.14 -0.1 4,983,326 - PS417_23005 0.15 -0.3 4,983,348 + PS417_23005 0.22 +0.5 4,983,520 + PS417_23005 0.82 +0.4 4,983,536 + PS417_23005 0.88 +0.2 4,983,629 + -0.1 4,983,629 + -0.8 4,983,629 + +0.7 4,983,629 + -0.4 4,983,630 - +2.0 4,983,630 - -0.6 4,983,630 - +0.8 4,983,654 + -0.2 4,983,754 + +0.2 4,983,825 - -0.0 4,983,842 + -1.2 4,983,843 - +0.3 4,983,907 + -0.5 4,983,931 + +0.2 4,983,932 - -0.1 4,983,932 - -0.3 4,984,110 - -0.1 4,984,150 + -0.4 4,984,166 - PS417_23015 0.14 -0.3 4,984,166 - PS417_23015 0.14 -0.0 4,984,342 + PS417_23015 0.71 +0.1 4,984,343 - PS417_23015 0.71 -0.1 4,984,429 + +0.5 4,984,430 - -0.8 4,984,439 + +0.8
Or see this region's nucleotide sequence