Strain Fitness in Pseudomonas simiae WCS417 around PS417_21485

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21480 and PS417_21485 are separated by 768 nucleotidesPS417_21485 and PS417_21490 are separated by 171 nucleotidesPS417_21490 and PS417_21495 overlap by 4 nucleotides PS417_21480: PS417_21480 - 23S rRNA pseudouridylate synthase, at 4,661,404 to 4,662,363 _21480 PS417_21485: PS417_21485 - ribonuclease E, at 4,663,132 to 4,666,278 _21485 PS417_21490: PS417_21490 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 4,666,450 to 4,667,040 _21490 PS417_21495: PS417_21495 - lipoprotein, at 4,667,037 to 4,668,023 _21495 Position (kb) 4663 4664 4665 4666 4667Strain fitness (log2 ratio) -2 -1 0 1at 4662.376 kb on - strandat 4662.726 kb on + strandat 4662.726 kb on + strandat 4662.772 kb on + strandat 4666.329 kb on + strandat 4666.346 kb on + strandat 4666.513 kb on + strand, within PS417_21490at 4666.513 kb on + strand, within PS417_21490at 4666.513 kb on + strand, within PS417_21490at 4666.514 kb on - strand, within PS417_21490at 4666.514 kb on - strand, within PS417_21490at 4666.606 kb on - strand, within PS417_21490at 4666.626 kb on - strand, within PS417_21490at 4666.773 kb on + strand, within PS417_21490at 4666.773 kb on + strand, within PS417_21490at 4666.774 kb on - strand, within PS417_21490at 4666.945 kb on + strand, within PS417_21490at 4666.946 kb on - strand, within PS417_21490at 4667.263 kb on + strand, within PS417_21495

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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4,662,376 - -0.3
4,662,726 + +0.1
4,662,726 + -0.1
4,662,772 + -0.6
4,666,329 + +0.1
4,666,346 + -0.1
4,666,513 + PS417_21490 0.11 +0.0
4,666,513 + PS417_21490 0.11 +1.0
4,666,513 + PS417_21490 0.11 +0.4
4,666,514 - PS417_21490 0.11 -2.1
4,666,514 - PS417_21490 0.11 -0.5
4,666,606 - PS417_21490 0.26 +0.1
4,666,626 - PS417_21490 0.30 +1.7
4,666,773 + PS417_21490 0.55 -0.3
4,666,773 + PS417_21490 0.55 -0.7
4,666,774 - PS417_21490 0.55 +0.6
4,666,945 + PS417_21490 0.84 +0.3
4,666,946 - PS417_21490 0.84 -0.1
4,667,263 + PS417_21495 0.23 -1.9

Or see this region's nucleotide sequence