Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01705 and PS417_01710 are separated by 108 nucleotides PS417_01710 and PS417_01715 overlap by 4 nucleotides PS417_01715 and PS417_01720 are separated by 405 nucleotides
PS417_01705: PS417_01705 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) <small>(from data)</small>, at 377,544 to 378,908
_01705
PS417_01710: PS417_01710 - histidine utilization repressor, at 379,017 to 379,766
_01710
PS417_01715: PS417_01715 - hypothetical protein, at 379,763 to 380,323
_01715
PS417_01720: PS417_01720 - Urocanate hydratase (EC 4.2.1.49) <small>(from data)</small>, at 380,729 to 382,399
_01720
Position (kb) 379
380 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.361 kb on + strand, within PS417_01705 at 378.362 kb on - strand, within PS417_01705 at 378.433 kb on + strand, within PS417_01705 at 378.547 kb on + strand, within PS417_01705 at 378.548 kb on - strand, within PS417_01705 at 378.595 kb on + strand, within PS417_01705 at 378.653 kb on - strand, within PS417_01705 at 378.852 kb on + strand at 378.853 kb on - strand at 378.853 kb on - strand at 378.934 kb on + strand at 378.934 kb on + strand at 378.940 kb on + strand at 378.941 kb on - strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.950 kb on + strand at 378.951 kb on - strand at 378.951 kb on - strand at 378.986 kb on + strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 379.080 kb on + strand at 379.081 kb on - strand at 379.081 kb on - strand at 379.346 kb on + strand, within PS417_01710 at 379.464 kb on - strand, within PS417_01710 at 379.516 kb on - strand, within PS417_01710 at 379.548 kb on + strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.796 kb on + strand at 379.797 kb on - strand at 379.800 kb on + strand at 379.801 kb on - strand at 379.937 kb on + strand, within PS417_01715 at 380.255 kb on - strand, within PS417_01715 at 380.372 kb on - strand at 380.372 kb on - strand at 380.550 kb on + strand at 380.567 kb on - strand at 380.648 kb on + strand at 380.659 kb on - strand at 380.659 kb on - strand at 380.740 kb on + strand at 380.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 378,129 + PS417_01705 0.43 -0.8 378,129 + PS417_01705 0.43 +0.1 378,129 + PS417_01705 0.43 +0.1 378,361 + PS417_01705 0.60 -0.5 378,362 - PS417_01705 0.60 +0.3 378,433 + PS417_01705 0.65 +1.2 378,547 + PS417_01705 0.73 +0.2 378,548 - PS417_01705 0.74 -0.4 378,595 + PS417_01705 0.77 -0.3 378,653 - PS417_01705 0.81 +0.0 378,852 + -0.4 378,853 - -0.0 378,853 - +0.4 378,934 + -0.8 378,934 + +0.5 378,940 + +0.3 378,941 - -0.3 378,942 + -1.0 378,942 + -0.3 378,943 - +0.0 378,943 - -0.3 378,944 + -0.2 378,944 + -2.2 378,944 + -1.0 378,944 + +0.2 378,945 - -0.4 378,945 - +0.1 378,945 - -0.4 378,945 - -0.2 378,948 + +0.3 378,948 + -0.1 378,948 + +0.2 378,948 + -0.0 378,949 - -0.2 378,949 - -0.5 378,949 - +0.4 378,950 + -0.7 378,951 - +1.2 378,951 - -0.5 378,986 + -0.4 378,987 - -1.6 378,987 - -2.7 378,987 - -3.5 378,987 - -1.3 379,080 + -2.8 379,081 - -2.4 379,081 - -1.7 379,346 + PS417_01710 0.44 -3.2 379,464 - PS417_01710 0.60 -2.5 379,516 - PS417_01710 0.67 -3.0 379,548 + PS417_01710 0.71 -1.6 379,549 - PS417_01710 0.71 -4.3 379,549 - PS417_01710 0.71 -3.6 379,796 + +0.6 379,797 - -1.0 379,800 + -0.0 379,801 - +0.1 379,937 + PS417_01715 0.31 -0.3 380,255 - PS417_01715 0.88 -0.9 380,372 - +0.5 380,372 - -0.8 380,550 + +0.5 380,567 - -0.5 380,648 + +0.6 380,659 - +0.0 380,659 - -0.2 380,740 + -1.3 380,741 - +1.0
Or see this region's nucleotide sequence