Strain Fitness in Pseudomonas simiae WCS417 around PS417_05190

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05185 and PS417_05190 are separated by 150 nucleotidesPS417_05190 and PS417_05195 overlap by 8 nucleotides PS417_05185: PS417_05185 - signal peptidase, at 1,151,593 to 1,152,447 _05185 PS417_05190: PS417_05190 - ribonuclease III, at 1,152,598 to 1,153,287 _05190 PS417_05195: PS417_05195 - GTPase Era, at 1,153,280 to 1,154,182 _05195 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -1 0 1at 1152.445 kb on + strandat 1154.247 kb on + strandat 1154.248 kb on - strandat 1154.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,152,445 + -1.3
1,154,247 + -0.2
1,154,248 - +0.1
1,154,248 - -0.8

Or see this region's nucleotide sequence