Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4495

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4494 and Echvi_4495 are separated by 71 nucleotidesEchvi_4495 and Echvi_4496 are separated by 494 nucleotides Echvi_4494: Echvi_4494 - Hemoglobin-like flavoprotein, at 5,372,709 to 5,373,917 _4494 Echvi_4495: Echvi_4495 - Rrf2 family protein, at 5,373,989 to 5,374,423 _4495 Echvi_4496: Echvi_4496 - Short-chain dehydrogenases of various substrate specificities, at 5,374,918 to 5,375,550 _4496 Position (kb) 5373 5374 5375Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5372.989 kb on - strand, within Echvi_4494at 5373.072 kb on - strand, within Echvi_4494at 5373.073 kb on + strand, within Echvi_4494at 5373.074 kb on - strand, within Echvi_4494at 5373.074 kb on - strand, within Echvi_4494at 5373.077 kb on + strand, within Echvi_4494at 5373.078 kb on - strand, within Echvi_4494at 5373.131 kb on + strand, within Echvi_4494at 5373.138 kb on - strand, within Echvi_4494at 5373.138 kb on - strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.177 kb on + strand, within Echvi_4494at 5373.178 kb on - strand, within Echvi_4494at 5373.178 kb on - strand, within Echvi_4494at 5373.178 kb on - strand, within Echvi_4494at 5373.178 kb on - strand, within Echvi_4494at 5373.178 kb on - strand, within Echvi_4494at 5373.180 kb on - strand, within Echvi_4494at 5373.208 kb on + strand, within Echvi_4494at 5373.209 kb on - strand, within Echvi_4494at 5373.227 kb on + strand, within Echvi_4494at 5373.227 kb on + strand, within Echvi_4494at 5373.227 kb on + strand, within Echvi_4494at 5373.228 kb on - strand, within Echvi_4494at 5373.228 kb on - strand, within Echvi_4494at 5373.229 kb on + strand, within Echvi_4494at 5373.229 kb on + strand, within Echvi_4494at 5373.249 kb on + strand, within Echvi_4494at 5373.250 kb on - strand, within Echvi_4494at 5373.293 kb on + strand, within Echvi_4494at 5373.296 kb on - strand, within Echvi_4494at 5373.296 kb on - strand, within Echvi_4494at 5373.299 kb on + strand, within Echvi_4494at 5373.299 kb on + strand, within Echvi_4494at 5373.300 kb on - strand, within Echvi_4494at 5373.300 kb on - strand, within Echvi_4494at 5373.305 kb on + strand, within Echvi_4494at 5373.306 kb on - strand, within Echvi_4494at 5373.329 kb on + strand, within Echvi_4494at 5373.345 kb on + strand, within Echvi_4494at 5373.347 kb on + strand, within Echvi_4494at 5373.347 kb on + strand, within Echvi_4494at 5373.347 kb on + strand, within Echvi_4494at 5373.348 kb on - strand, within Echvi_4494at 5373.348 kb on - strand, within Echvi_4494at 5373.348 kb on - strand, within Echvi_4494at 5373.348 kb on - strand, within Echvi_4494at 5373.348 kb on - strand, within Echvi_4494at 5373.348 kb on - strand, within Echvi_4494at 5373.349 kb on + strand, within Echvi_4494at 5373.349 kb on + strand, within Echvi_4494at 5373.349 kb on + strand, within Echvi_4494at 5373.349 kb on + strand, within Echvi_4494at 5373.349 kb on + strand, within Echvi_4494at 5373.349 kb on + strand, within Echvi_4494at 5373.350 kb on - strand, within Echvi_4494at 5373.350 kb on - strand, within Echvi_4494at 5373.350 kb on - strand, within Echvi_4494at 5373.350 kb on - strand, within Echvi_4494at 5373.392 kb on + strand, within Echvi_4494at 5373.393 kb on - strand, within Echvi_4494at 5373.393 kb on - strand, within Echvi_4494at 5373.400 kb on + strand, within Echvi_4494at 5373.400 kb on + strand, within Echvi_4494at 5373.410 kb on + strand, within Echvi_4494at 5373.410 kb on + strand, within Echvi_4494at 5373.411 kb on - strand, within Echvi_4494at 5373.447 kb on - strand, within Echvi_4494at 5373.465 kb on - strand, within Echvi_4494at 5373.496 kb on + strand, within Echvi_4494at 5373.496 kb on + strand, within Echvi_4494at 5373.496 kb on + strand, within Echvi_4494at 5373.499 kb on - strand, within Echvi_4494at 5373.518 kb on + strand, within Echvi_4494at 5373.519 kb on - strand, within Echvi_4494at 5373.523 kb on - strand, within Echvi_4494at 5373.541 kb on + strand, within Echvi_4494at 5373.541 kb on + strand, within Echvi_4494at 5373.541 kb on + strand, within Echvi_4494at 5373.541 kb on + strand, within Echvi_4494at 5373.541 kb on + strand, within Echvi_4494at 5373.562 kb on - strand, within Echvi_4494at 5373.562 kb on - strand, within Echvi_4494at 5373.564 kb on + strand, within Echvi_4494at 5373.564 kb on + strand, within Echvi_4494at 5373.564 kb on + strand, within Echvi_4494at 5373.565 kb on - strand, within Echvi_4494at 5373.628 kb on - strand, within Echvi_4494at 5373.668 kb on + strand, within Echvi_4494at 5373.668 kb on + strand, within Echvi_4494at 5373.668 kb on + strand, within Echvi_4494at 5373.683 kb on + strand, within Echvi_4494at 5373.684 kb on - strand, within Echvi_4494at 5373.716 kb on + strand, within Echvi_4494at 5373.718 kb on + strand, within Echvi_4494at 5373.718 kb on + strand, within Echvi_4494at 5373.718 kb on + strand, within Echvi_4494at 5373.735 kb on - strand, within Echvi_4494at 5373.785 kb on + strand, within Echvi_4494at 5373.786 kb on - strand, within Echvi_4494at 5373.846 kb on + strandat 5373.859 kb on + strandat 5373.859 kb on + strandat 5373.860 kb on - strandat 5373.909 kb on - strandat 5373.985 kb on + strandat 5373.985 kb on + strandat 5374.019 kb on + strandat 5374.019 kb on + strandat 5374.040 kb on + strand, within Echvi_4495at 5374.075 kb on + strand, within Echvi_4495at 5374.080 kb on - strand, within Echvi_4495at 5374.080 kb on - strand, within Echvi_4495at 5374.153 kb on + strand, within Echvi_4495at 5374.158 kb on - strand, within Echvi_4495at 5374.158 kb on - strand, within Echvi_4495at 5374.158 kb on - strand, within Echvi_4495at 5374.163 kb on - strand, within Echvi_4495at 5374.193 kb on + strand, within Echvi_4495at 5374.202 kb on - strand, within Echvi_4495at 5374.204 kb on + strand, within Echvi_4495at 5374.267 kb on + strand, within Echvi_4495at 5374.319 kb on + strand, within Echvi_4495at 5374.319 kb on + strand, within Echvi_4495at 5374.613 kb on - strandat 5374.627 kb on + strandat 5374.627 kb on + strandat 5374.628 kb on - strandat 5374.628 kb on - strandat 5374.628 kb on - strandat 5374.628 kb on - strandat 5374.673 kb on + strandat 5374.674 kb on - strandat 5374.707 kb on + strandat 5374.708 kb on - strandat 5374.744 kb on - strandat 5374.778 kb on + strandat 5374.779 kb on - strandat 5374.787 kb on + strandat 5374.788 kb on - strandat 5374.788 kb on - strandat 5374.788 kb on - strandat 5374.802 kb on - strandat 5374.802 kb on - strandat 5374.802 kb on - strandat 5374.806 kb on - strandat 5374.807 kb on + strandat 5374.808 kb on - strandat 5374.808 kb on - strandat 5374.820 kb on - strandat 5374.821 kb on + strandat 5374.822 kb on - strandat 5374.822 kb on - strandat 5374.866 kb on - strandat 5374.866 kb on - strandat 5374.916 kb on + strandat 5374.919 kb on + strandat 5374.920 kb on - strandat 5374.923 kb on - strandat 5374.936 kb on - strandat 5374.979 kb on + strandat 5374.980 kb on - strandat 5375.004 kb on + strand, within Echvi_4496at 5375.007 kb on + strandat 5375.008 kb on - strand, within Echvi_4496at 5375.012 kb on - strand, within Echvi_4496at 5375.012 kb on - strand, within Echvi_4496at 5375.026 kb on + strand, within Echvi_4496at 5375.054 kb on + strand, within Echvi_4496at 5375.146 kb on - strand, within Echvi_4496at 5375.146 kb on - strand, within Echvi_4496at 5375.211 kb on + strand, within Echvi_4496at 5375.279 kb on + strand, within Echvi_4496at 5375.279 kb on + strand, within Echvi_4496at 5375.279 kb on + strand, within Echvi_4496at 5375.280 kb on - strand, within Echvi_4496at 5375.280 kb on - strand, within Echvi_4496at 5375.280 kb on - strand, within Echvi_4496at 5375.280 kb on - strand, within Echvi_4496at 5375.281 kb on + strand, within Echvi_4496at 5375.281 kb on + strand, within Echvi_4496at 5375.281 kb on + strand, within Echvi_4496at 5375.281 kb on + strand, within Echvi_4496at 5375.281 kb on + strand, within Echvi_4496at 5375.281 kb on + strand, within Echvi_4496at 5375.281 kb on + strand, within Echvi_4496at 5375.334 kb on + strand, within Echvi_4496at 5375.335 kb on - strand, within Echvi_4496at 5375.361 kb on - strand, within Echvi_4496at 5375.366 kb on - strand, within Echvi_4496at 5375.398 kb on - strand, within Echvi_4496at 5375.404 kb on - strand, within Echvi_4496at 5375.404 kb on - strand, within Echvi_4496at 5375.419 kb on + strand, within Echvi_4496at 5375.420 kb on - strand, within Echvi_4496at 5375.420 kb on - strand, within Echvi_4496

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,372,989 - Echvi_4494 0.23 -0.9
5,373,072 - Echvi_4494 0.30 +0.2
5,373,073 + Echvi_4494 0.30 +0.1
5,373,074 - Echvi_4494 0.30 -0.6
5,373,074 - Echvi_4494 0.30 +0.7
5,373,077 + Echvi_4494 0.30 -0.1
5,373,078 - Echvi_4494 0.31 +0.3
5,373,131 + Echvi_4494 0.35 -0.8
5,373,138 - Echvi_4494 0.35 +0.0
5,373,138 - Echvi_4494 0.35 +1.2
5,373,177 + Echvi_4494 0.39 +0.5
5,373,177 + Echvi_4494 0.39 -0.1
5,373,177 + Echvi_4494 0.39 -1.0
5,373,177 + Echvi_4494 0.39 +0.3
5,373,177 + Echvi_4494 0.39 -1.4
5,373,177 + Echvi_4494 0.39 -0.7
5,373,177 + Echvi_4494 0.39 -2.5
5,373,177 + Echvi_4494 0.39 +0.5
5,373,177 + Echvi_4494 0.39 +0.8
5,373,177 + Echvi_4494 0.39 +1.5
5,373,178 - Echvi_4494 0.39 -0.0
5,373,178 - Echvi_4494 0.39 -1.2
5,373,178 - Echvi_4494 0.39 +0.7
5,373,178 - Echvi_4494 0.39 -0.0
5,373,178 - Echvi_4494 0.39 +0.1
5,373,180 - Echvi_4494 0.39 +0.7
5,373,208 + Echvi_4494 0.41 -0.9
5,373,209 - Echvi_4494 0.41 +1.4
5,373,227 + Echvi_4494 0.43 +0.6
5,373,227 + Echvi_4494 0.43 -1.4
5,373,227 + Echvi_4494 0.43 +1.7
5,373,228 - Echvi_4494 0.43 -0.3
5,373,228 - Echvi_4494 0.43 -0.5
5,373,229 + Echvi_4494 0.43 -1.0
5,373,229 + Echvi_4494 0.43 -0.3
5,373,249 + Echvi_4494 0.45 -0.8
5,373,250 - Echvi_4494 0.45 -0.7
5,373,293 + Echvi_4494 0.48 +0.6
5,373,296 - Echvi_4494 0.49 +0.8
5,373,296 - Echvi_4494 0.49 -1.0
5,373,299 + Echvi_4494 0.49 -0.2
5,373,299 + Echvi_4494 0.49 +1.3
5,373,300 - Echvi_4494 0.49 +0.1
5,373,300 - Echvi_4494 0.49 -0.1
5,373,305 + Echvi_4494 0.49 +0.3
5,373,306 - Echvi_4494 0.49 -0.1
5,373,329 + Echvi_4494 0.51 +0.7
5,373,345 + Echvi_4494 0.53 -0.6
5,373,347 + Echvi_4494 0.53 +0.5
5,373,347 + Echvi_4494 0.53 +1.7
5,373,347 + Echvi_4494 0.53 -0.5
5,373,348 - Echvi_4494 0.53 -0.7
5,373,348 - Echvi_4494 0.53 +0.1
5,373,348 - Echvi_4494 0.53 -0.3
5,373,348 - Echvi_4494 0.53 +1.1
5,373,348 - Echvi_4494 0.53 -1.3
5,373,348 - Echvi_4494 0.53 -0.7
5,373,349 + Echvi_4494 0.53 -0.7
5,373,349 + Echvi_4494 0.53 +0.2
5,373,349 + Echvi_4494 0.53 +0.2
5,373,349 + Echvi_4494 0.53 +0.3
5,373,349 + Echvi_4494 0.53 -0.1
5,373,349 + Echvi_4494 0.53 -0.7
5,373,350 - Echvi_4494 0.53 -2.3
5,373,350 - Echvi_4494 0.53 -1.1
5,373,350 - Echvi_4494 0.53 +0.3
5,373,350 - Echvi_4494 0.53 -0.3
5,373,392 + Echvi_4494 0.56 +0.8
5,373,393 - Echvi_4494 0.57 -1.0
5,373,393 - Echvi_4494 0.57 +0.2
5,373,400 + Echvi_4494 0.57 +0.8
5,373,400 + Echvi_4494 0.57 -0.1
5,373,410 + Echvi_4494 0.58 +0.0
5,373,410 + Echvi_4494 0.58 +1.6
5,373,411 - Echvi_4494 0.58 -0.0
5,373,447 - Echvi_4494 0.61 -0.8
5,373,465 - Echvi_4494 0.63 +0.3
5,373,496 + Echvi_4494 0.65 -0.9
5,373,496 + Echvi_4494 0.65 -0.2
5,373,496 + Echvi_4494 0.65 -0.2
5,373,499 - Echvi_4494 0.65 -0.5
5,373,518 + Echvi_4494 0.67 -0.3
5,373,519 - Echvi_4494 0.67 -0.6
5,373,523 - Echvi_4494 0.67 +1.6
5,373,541 + Echvi_4494 0.69 -0.7
5,373,541 + Echvi_4494 0.69 -1.4
5,373,541 + Echvi_4494 0.69 -0.3
5,373,541 + Echvi_4494 0.69 -0.3
5,373,541 + Echvi_4494 0.69 -0.6
5,373,562 - Echvi_4494 0.71 -0.2
5,373,562 - Echvi_4494 0.71 -0.1
5,373,564 + Echvi_4494 0.71 -0.7
5,373,564 + Echvi_4494 0.71 -1.5
5,373,564 + Echvi_4494 0.71 -1.1
5,373,565 - Echvi_4494 0.71 +0.5
5,373,628 - Echvi_4494 0.76 -2.6
5,373,668 + Echvi_4494 0.79 -0.5
5,373,668 + Echvi_4494 0.79 +0.7
5,373,668 + Echvi_4494 0.79 +0.1
5,373,683 + Echvi_4494 0.81 +0.3
5,373,684 - Echvi_4494 0.81 +1.6
5,373,716 + Echvi_4494 0.83 +0.9
5,373,718 + Echvi_4494 0.83 +0.0
5,373,718 + Echvi_4494 0.83 -1.1
5,373,718 + Echvi_4494 0.83 +4.4
5,373,735 - Echvi_4494 0.85 -0.7
5,373,785 + Echvi_4494 0.89 +0.2
5,373,786 - Echvi_4494 0.89 -0.8
5,373,846 + -0.6
5,373,859 + -1.1
5,373,859 + +0.1
5,373,860 - +1.3
5,373,909 - -1.0
5,373,985 + -0.3
5,373,985 + -3.2
5,374,019 + -0.4
5,374,019 + -0.9
5,374,040 + Echvi_4495 0.12 +0.1
5,374,075 + Echvi_4495 0.20 +1.2
5,374,080 - Echvi_4495 0.21 -0.6
5,374,080 - Echvi_4495 0.21 +0.5
5,374,153 + Echvi_4495 0.38 +0.5
5,374,158 - Echvi_4495 0.39 +0.6
5,374,158 - Echvi_4495 0.39 +1.1
5,374,158 - Echvi_4495 0.39 +1.0
5,374,163 - Echvi_4495 0.40 +0.2
5,374,193 + Echvi_4495 0.47 +0.7
5,374,202 - Echvi_4495 0.49 +0.6
5,374,204 + Echvi_4495 0.49 +0.4
5,374,267 + Echvi_4495 0.64 +0.7
5,374,319 + Echvi_4495 0.76 -1.3
5,374,319 + Echvi_4495 0.76 -0.4
5,374,613 - +0.1
5,374,627 + +1.3
5,374,627 + +0.6
5,374,628 - -0.1
5,374,628 - +0.2
5,374,628 - +0.3
5,374,628 - +0.5
5,374,673 + +0.4
5,374,674 - -0.7
5,374,707 + -0.7
5,374,708 - +0.2
5,374,744 - +0.7
5,374,778 + +0.1
5,374,779 - -0.9
5,374,787 + +1.1
5,374,788 - -0.9
5,374,788 - -0.1
5,374,788 - +0.5
5,374,802 - +0.9
5,374,802 - +0.5
5,374,802 - +0.1
5,374,806 - -0.4
5,374,807 + -1.2
5,374,808 - +0.3
5,374,808 - -2.7
5,374,820 - +0.4
5,374,821 + +1.4
5,374,822 - -0.1
5,374,822 - -1.3
5,374,866 - -0.5
5,374,866 - -0.1
5,374,916 + -1.3
5,374,919 + -1.5
5,374,920 - -1.0
5,374,923 - -1.5
5,374,936 - -0.3
5,374,979 + -1.4
5,374,980 - +0.7
5,375,004 + Echvi_4496 0.14 +0.3
5,375,007 + +1.1
5,375,008 - Echvi_4496 0.14 -0.6
5,375,012 - Echvi_4496 0.15 +0.1
5,375,012 - Echvi_4496 0.15 +1.2
5,375,026 + Echvi_4496 0.17 +0.4
5,375,054 + Echvi_4496 0.21 +0.6
5,375,146 - Echvi_4496 0.36 -0.0
5,375,146 - Echvi_4496 0.36 -1.4
5,375,211 + Echvi_4496 0.46 +0.9
5,375,279 + Echvi_4496 0.57 -1.1
5,375,279 + Echvi_4496 0.57 +0.6
5,375,279 + Echvi_4496 0.57 +0.1
5,375,280 - Echvi_4496 0.57 +0.2
5,375,280 - Echvi_4496 0.57 -0.3
5,375,280 - Echvi_4496 0.57 -0.3
5,375,280 - Echvi_4496 0.57 -1.3
5,375,281 + Echvi_4496 0.57 +1.1
5,375,281 + Echvi_4496 0.57 -0.8
5,375,281 + Echvi_4496 0.57 +0.7
5,375,281 + Echvi_4496 0.57 -0.3
5,375,281 + Echvi_4496 0.57 -0.9
5,375,281 + Echvi_4496 0.57 +0.1
5,375,281 + Echvi_4496 0.57 -0.4
5,375,334 + Echvi_4496 0.66 +0.4
5,375,335 - Echvi_4496 0.66 -2.4
5,375,361 - Echvi_4496 0.70 +0.3
5,375,366 - Echvi_4496 0.71 -0.7
5,375,398 - Echvi_4496 0.76 -0.1
5,375,404 - Echvi_4496 0.77 -1.6
5,375,404 - Echvi_4496 0.77 +0.2
5,375,419 + Echvi_4496 0.79 -0.5
5,375,420 - Echvi_4496 0.79 +0.3
5,375,420 - Echvi_4496 0.79 -0.2

Or see this region's nucleotide sequence