Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1112

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1111 and Echvi_1112 are separated by 359 nucleotidesEchvi_1112 and Echvi_1113 are separated by 48 nucleotidesEchvi_1113 and Echvi_1114 are separated by 3 nucleotides Echvi_1111: Echvi_1111 - inosine-5'-monophosphate dehydrogenase, at 1,274,372 to 1,275,850 _1111 Echvi_1112: Echvi_1112 - Predicted permeases, at 1,276,210 to 1,277,115 _1112 Echvi_1113: Echvi_1113 - hypothetical protein, at 1,277,164 to 1,277,454 _1113 Echvi_1114: Echvi_1114 - hypothetical protein, at 1,277,458 to 1,277,832 _1114 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1275.990 kb on - strandat 1276.006 kb on + strandat 1276.112 kb on + strandat 1276.112 kb on + strandat 1276.113 kb on - strandat 1276.113 kb on - strandat 1276.127 kb on - strandat 1276.217 kb on - strandat 1276.226 kb on + strandat 1276.226 kb on + strandat 1276.227 kb on - strandat 1276.369 kb on - strand, within Echvi_1112at 1276.369 kb on - strand, within Echvi_1112at 1276.369 kb on - strand, within Echvi_1112at 1276.370 kb on + strand, within Echvi_1112at 1276.370 kb on + strand, within Echvi_1112at 1276.370 kb on + strand, within Echvi_1112at 1276.371 kb on - strand, within Echvi_1112at 1276.371 kb on - strand, within Echvi_1112at 1276.371 kb on - strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.378 kb on - strand, within Echvi_1112at 1276.403 kb on + strand, within Echvi_1112at 1276.409 kb on - strand, within Echvi_1112at 1276.429 kb on - strand, within Echvi_1112at 1276.429 kb on - strand, within Echvi_1112at 1276.441 kb on - strand, within Echvi_1112at 1276.447 kb on + strand, within Echvi_1112at 1276.447 kb on + strand, within Echvi_1112at 1276.448 kb on - strand, within Echvi_1112at 1276.448 kb on - strand, within Echvi_1112at 1276.448 kb on - strand, within Echvi_1112at 1276.495 kb on + strand, within Echvi_1112at 1276.495 kb on + strand, within Echvi_1112at 1276.495 kb on + strand, within Echvi_1112at 1276.582 kb on + strand, within Echvi_1112at 1276.582 kb on + strand, within Echvi_1112at 1276.583 kb on - strand, within Echvi_1112at 1276.583 kb on - strand, within Echvi_1112at 1276.583 kb on - strand, within Echvi_1112at 1276.642 kb on + strand, within Echvi_1112at 1276.653 kb on + strand, within Echvi_1112at 1276.674 kb on + strand, within Echvi_1112at 1276.675 kb on - strand, within Echvi_1112at 1276.675 kb on - strand, within Echvi_1112at 1276.685 kb on + strand, within Echvi_1112at 1276.685 kb on + strand, within Echvi_1112at 1276.685 kb on + strand, within Echvi_1112at 1276.686 kb on - strand, within Echvi_1112at 1276.686 kb on - strand, within Echvi_1112at 1276.686 kb on - strand, within Echvi_1112at 1276.807 kb on - strand, within Echvi_1112at 1276.918 kb on + strand, within Echvi_1112at 1276.974 kb on + strand, within Echvi_1112at 1276.999 kb on + strand, within Echvi_1112at 1276.999 kb on + strand, within Echvi_1112at 1277.000 kb on - strand, within Echvi_1112at 1277.000 kb on - strand, within Echvi_1112at 1277.000 kb on - strand, within Echvi_1112at 1277.004 kb on + strand, within Echvi_1112at 1277.005 kb on - strand, within Echvi_1112at 1277.006 kb on + strand, within Echvi_1112at 1277.006 kb on + strand, within Echvi_1112at 1277.006 kb on + strand, within Echvi_1112at 1277.007 kb on - strand, within Echvi_1112at 1277.007 kb on - strand, within Echvi_1112at 1277.007 kb on - strand, within Echvi_1112at 1277.011 kb on - strand, within Echvi_1112at 1277.011 kb on - strand, within Echvi_1112at 1277.011 kb on - strand, within Echvi_1112at 1277.011 kb on - strand, within Echvi_1112at 1277.015 kb on + strand, within Echvi_1112at 1277.015 kb on + strand, within Echvi_1112at 1277.016 kb on - strand, within Echvi_1112at 1277.016 kb on - strand, within Echvi_1112at 1277.019 kb on + strand, within Echvi_1112at 1277.019 kb on + strand, within Echvi_1112at 1277.019 kb on + strand, within Echvi_1112at 1277.020 kb on - strand, within Echvi_1112at 1277.020 kb on - strand, within Echvi_1112at 1277.020 kb on - strand, within Echvi_1112at 1277.024 kb on - strand, within Echvi_1112at 1277.071 kb on + strandat 1277.071 kb on + strandat 1277.104 kb on + strandat 1277.105 kb on - strandat 1277.105 kb on - strandat 1277.149 kb on + strandat 1277.156 kb on - strandat 1277.161 kb on - strandat 1277.171 kb on + strandat 1277.190 kb on - strandat 1277.191 kb on + strandat 1277.220 kb on + strand, within Echvi_1113at 1277.220 kb on + strand, within Echvi_1113at 1277.220 kb on + strand, within Echvi_1113at 1277.220 kb on + strand, within Echvi_1113at 1277.237 kb on + strand, within Echvi_1113at 1277.241 kb on + strand, within Echvi_1113at 1277.241 kb on + strand, within Echvi_1113at 1277.242 kb on - strand, within Echvi_1113at 1277.262 kb on + strand, within Echvi_1113at 1277.263 kb on - strand, within Echvi_1113at 1277.331 kb on + strand, within Echvi_1113at 1277.342 kb on + strand, within Echvi_1113at 1277.343 kb on - strand, within Echvi_1113at 1277.343 kb on - strand, within Echvi_1113at 1277.343 kb on - strand, within Echvi_1113at 1277.347 kb on + strand, within Echvi_1113at 1277.347 kb on + strand, within Echvi_1113at 1277.348 kb on - strand, within Echvi_1113at 1277.348 kb on - strand, within Echvi_1113at 1277.348 kb on - strand, within Echvi_1113at 1277.374 kb on - strand, within Echvi_1113at 1277.390 kb on - strand, within Echvi_1113at 1277.390 kb on - strand, within Echvi_1113at 1277.390 kb on - strand, within Echvi_1113at 1277.395 kb on + strand, within Echvi_1113at 1277.395 kb on + strand, within Echvi_1113at 1277.395 kb on + strand, within Echvi_1113at 1277.396 kb on - strand, within Echvi_1113at 1277.417 kb on + strand, within Echvi_1113at 1277.450 kb on + strandat 1277.450 kb on + strandat 1277.450 kb on + strandat 1277.450 kb on + strandat 1277.450 kb on + strandat 1277.450 kb on + strandat 1277.451 kb on - strandat 1277.451 kb on - strandat 1277.451 kb on - strandat 1277.496 kb on - strand, within Echvi_1114at 1277.513 kb on + strand, within Echvi_1114at 1277.513 kb on + strand, within Echvi_1114at 1277.520 kb on + strand, within Echvi_1114at 1277.568 kb on + strand, within Echvi_1114at 1277.568 kb on + strand, within Echvi_1114at 1277.584 kb on + strand, within Echvi_1114at 1277.585 kb on - strand, within Echvi_1114at 1277.585 kb on - strand, within Echvi_1114at 1277.585 kb on - strand, within Echvi_1114at 1277.608 kb on + strand, within Echvi_1114at 1277.609 kb on - strand, within Echvi_1114at 1277.609 kb on - strand, within Echvi_1114at 1277.610 kb on + strand, within Echvi_1114at 1277.627 kb on - strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.720 kb on + strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.721 kb on - strand, within Echvi_1114at 1277.722 kb on + strand, within Echvi_1114at 1277.722 kb on + strand, within Echvi_1114at 1277.722 kb on + strand, within Echvi_1114at 1277.722 kb on + strand, within Echvi_1114at 1277.722 kb on + strand, within Echvi_1114at 1277.722 kb on + strand, within Echvi_1114at 1277.723 kb on - strand, within Echvi_1114at 1277.761 kb on + strand, within Echvi_1114at 1277.761 kb on + strand, within Echvi_1114at 1277.761 kb on + strand, within Echvi_1114at 1277.761 kb on + strand, within Echvi_1114at 1277.761 kb on + strand, within Echvi_1114at 1277.762 kb on - strand, within Echvi_1114at 1277.802 kb on - strandat 1277.802 kb on - strandat 1277.802 kb on - strandat 1277.833 kb on - strandat 1277.843 kb on + strandat 1277.931 kb on - strandat 1277.942 kb on + strandat 1277.980 kb on + strandat 1277.980 kb on + strandat 1277.980 kb on + strandat 1277.980 kb on + strandat 1277.981 kb on - strandat 1277.981 kb on - strandat 1278.031 kb on - strandat 1278.054 kb on - strandat 1278.054 kb on - strandat 1278.054 kb on - strandat 1278.083 kb on + strandat 1278.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,275,990 - +0.4
1,276,006 + -0.5
1,276,112 + -0.9
1,276,112 + -0.8
1,276,113 - -1.0
1,276,113 - -0.2
1,276,127 - +1.8
1,276,217 - -0.4
1,276,226 + +0.1
1,276,226 + -0.0
1,276,227 - -0.1
1,276,369 - Echvi_1112 0.18 -0.3
1,276,369 - Echvi_1112 0.18 +0.7
1,276,369 - Echvi_1112 0.18 -0.8
1,276,370 + Echvi_1112 0.18 +0.5
1,276,370 + Echvi_1112 0.18 +0.2
1,276,370 + Echvi_1112 0.18 -0.6
1,276,371 - Echvi_1112 0.18 +0.9
1,276,371 - Echvi_1112 0.18 -1.4
1,276,371 - Echvi_1112 0.18 +0.1
1,276,375 + Echvi_1112 0.18 -0.4
1,276,375 + Echvi_1112 0.18 -0.5
1,276,375 + Echvi_1112 0.18 +0.4
1,276,375 + Echvi_1112 0.18 -0.4
1,276,375 + Echvi_1112 0.18 -0.2
1,276,375 + Echvi_1112 0.18 -0.9
1,276,375 + Echvi_1112 0.18 -0.7
1,276,375 + Echvi_1112 0.18 -1.5
1,276,376 - Echvi_1112 0.18 +0.5
1,276,376 - Echvi_1112 0.18 +0.4
1,276,376 - Echvi_1112 0.18 +0.5
1,276,376 - Echvi_1112 0.18 -0.5
1,276,376 - Echvi_1112 0.18 -0.2
1,276,376 - Echvi_1112 0.18 -0.8
1,276,376 - Echvi_1112 0.18 -0.6
1,276,376 - Echvi_1112 0.18 -0.7
1,276,376 - Echvi_1112 0.18 -0.1
1,276,376 - Echvi_1112 0.18 -1.2
1,276,376 - Echvi_1112 0.18 +0.0
1,276,376 - Echvi_1112 0.18 -0.8
1,276,376 - Echvi_1112 0.18 +0.6
1,276,376 - Echvi_1112 0.18 -1.3
1,276,377 + Echvi_1112 0.18 -1.1
1,276,377 + Echvi_1112 0.18 +0.3
1,276,377 + Echvi_1112 0.18 +0.7
1,276,377 + Echvi_1112 0.18 +0.1
1,276,377 + Echvi_1112 0.18 -0.0
1,276,378 - Echvi_1112 0.19 +1.7
1,276,403 + Echvi_1112 0.21 +0.6
1,276,409 - Echvi_1112 0.22 -0.4
1,276,429 - Echvi_1112 0.24 +0.4
1,276,429 - Echvi_1112 0.24 +0.2
1,276,441 - Echvi_1112 0.25 -0.2
1,276,447 + Echvi_1112 0.26 -0.5
1,276,447 + Echvi_1112 0.26 +1.6
1,276,448 - Echvi_1112 0.26 -0.3
1,276,448 - Echvi_1112 0.26 -1.2
1,276,448 - Echvi_1112 0.26 +0.1
1,276,495 + Echvi_1112 0.31 +0.4
1,276,495 + Echvi_1112 0.31 +0.5
1,276,495 + Echvi_1112 0.31 -1.5
1,276,582 + Echvi_1112 0.41 -0.4
1,276,582 + Echvi_1112 0.41 -0.6
1,276,583 - Echvi_1112 0.41 -0.1
1,276,583 - Echvi_1112 0.41 -0.5
1,276,583 - Echvi_1112 0.41 -0.5
1,276,642 + Echvi_1112 0.48 +0.7
1,276,653 + Echvi_1112 0.49 +0.6
1,276,674 + Echvi_1112 0.51 +0.8
1,276,675 - Echvi_1112 0.51 +1.3
1,276,675 - Echvi_1112 0.51 +0.6
1,276,685 + Echvi_1112 0.52 +0.5
1,276,685 + Echvi_1112 0.52 -0.0
1,276,685 + Echvi_1112 0.52 -0.0
1,276,686 - Echvi_1112 0.53 -0.2
1,276,686 - Echvi_1112 0.53 -1.8
1,276,686 - Echvi_1112 0.53 -1.9
1,276,807 - Echvi_1112 0.66 -0.1
1,276,918 + Echvi_1112 0.78 +0.2
1,276,974 + Echvi_1112 0.84 -2.9
1,276,999 + Echvi_1112 0.87 +0.6
1,276,999 + Echvi_1112 0.87 +1.3
1,277,000 - Echvi_1112 0.87 -0.4
1,277,000 - Echvi_1112 0.87 +0.3
1,277,000 - Echvi_1112 0.87 +0.7
1,277,004 + Echvi_1112 0.88 -0.4
1,277,005 - Echvi_1112 0.88 -1.6
1,277,006 + Echvi_1112 0.88 +0.2
1,277,006 + Echvi_1112 0.88 +0.2
1,277,006 + Echvi_1112 0.88 -0.8
1,277,007 - Echvi_1112 0.88 -0.3
1,277,007 - Echvi_1112 0.88 +0.2
1,277,007 - Echvi_1112 0.88 -0.6
1,277,011 - Echvi_1112 0.88 -1.2
1,277,011 - Echvi_1112 0.88 +0.5
1,277,011 - Echvi_1112 0.88 -0.0
1,277,011 - Echvi_1112 0.88 +0.8
1,277,015 + Echvi_1112 0.89 +0.9
1,277,015 + Echvi_1112 0.89 -0.3
1,277,016 - Echvi_1112 0.89 +2.3
1,277,016 - Echvi_1112 0.89 -0.5
1,277,019 + Echvi_1112 0.89 +0.0
1,277,019 + Echvi_1112 0.89 +0.1
1,277,019 + Echvi_1112 0.89 -1.3
1,277,020 - Echvi_1112 0.89 -0.0
1,277,020 - Echvi_1112 0.89 -0.1
1,277,020 - Echvi_1112 0.89 -0.3
1,277,024 - Echvi_1112 0.90 -1.2
1,277,071 + +0.3
1,277,071 + -0.7
1,277,104 + +0.1
1,277,105 - -0.5
1,277,105 - -0.4
1,277,149 + -0.3
1,277,156 - +0.5
1,277,161 - -1.2
1,277,171 + +0.4
1,277,190 - +0.8
1,277,191 + +1.0
1,277,220 + Echvi_1113 0.19 -0.4
1,277,220 + Echvi_1113 0.19 -0.5
1,277,220 + Echvi_1113 0.19 -0.0
1,277,220 + Echvi_1113 0.19 -0.1
1,277,237 + Echvi_1113 0.25 -0.1
1,277,241 + Echvi_1113 0.26 +0.1
1,277,241 + Echvi_1113 0.26 +0.1
1,277,242 - Echvi_1113 0.27 +0.7
1,277,262 + Echvi_1113 0.34 +0.1
1,277,263 - Echvi_1113 0.34 +0.7
1,277,331 + Echvi_1113 0.57 -0.9
1,277,342 + Echvi_1113 0.61 -2.4
1,277,343 - Echvi_1113 0.62 +1.7
1,277,343 - Echvi_1113 0.62 +2.7
1,277,343 - Echvi_1113 0.62 -0.8
1,277,347 + Echvi_1113 0.63 +0.8
1,277,347 + Echvi_1113 0.63 +0.4
1,277,348 - Echvi_1113 0.63 +0.9
1,277,348 - Echvi_1113 0.63 +0.3
1,277,348 - Echvi_1113 0.63 +0.1
1,277,374 - Echvi_1113 0.72 +1.8
1,277,390 - Echvi_1113 0.78 -1.9
1,277,390 - Echvi_1113 0.78 -2.1
1,277,390 - Echvi_1113 0.78 -0.5
1,277,395 + Echvi_1113 0.79 +0.1
1,277,395 + Echvi_1113 0.79 +0.3
1,277,395 + Echvi_1113 0.79 +0.6
1,277,396 - Echvi_1113 0.80 -1.9
1,277,417 + Echvi_1113 0.87 +0.4
1,277,450 + +2.1
1,277,450 + -1.1
1,277,450 + +0.5
1,277,450 + -0.5
1,277,450 + -0.8
1,277,450 + -0.2
1,277,451 - +1.7
1,277,451 - +0.1
1,277,451 - +1.5
1,277,496 - Echvi_1114 0.10 +0.1
1,277,513 + Echvi_1114 0.15 -0.3
1,277,513 + Echvi_1114 0.15 +0.1
1,277,520 + Echvi_1114 0.17 -0.6
1,277,568 + Echvi_1114 0.29 -0.8
1,277,568 + Echvi_1114 0.29 -0.3
1,277,584 + Echvi_1114 0.34 -0.0
1,277,585 - Echvi_1114 0.34 +0.5
1,277,585 - Echvi_1114 0.34 -0.6
1,277,585 - Echvi_1114 0.34 -0.3
1,277,608 + Echvi_1114 0.40 -0.0
1,277,609 - Echvi_1114 0.40 +0.1
1,277,609 - Echvi_1114 0.40 -0.8
1,277,610 + Echvi_1114 0.41 -0.2
1,277,627 - Echvi_1114 0.45 +1.0
1,277,720 + Echvi_1114 0.70 -0.7
1,277,720 + Echvi_1114 0.70 -1.7
1,277,720 + Echvi_1114 0.70 -1.6
1,277,720 + Echvi_1114 0.70 -0.4
1,277,720 + Echvi_1114 0.70 +0.3
1,277,720 + Echvi_1114 0.70 -0.1
1,277,720 + Echvi_1114 0.70 +1.5
1,277,720 + Echvi_1114 0.70 -0.8
1,277,720 + Echvi_1114 0.70 -0.0
1,277,720 + Echvi_1114 0.70 +0.0
1,277,721 - Echvi_1114 0.70 -0.9
1,277,721 - Echvi_1114 0.70 -0.7
1,277,721 - Echvi_1114 0.70 +0.1
1,277,721 - Echvi_1114 0.70 +0.4
1,277,721 - Echvi_1114 0.70 -0.0
1,277,721 - Echvi_1114 0.70 -0.5
1,277,721 - Echvi_1114 0.70 +0.1
1,277,721 - Echvi_1114 0.70 +0.3
1,277,721 - Echvi_1114 0.70 -0.5
1,277,721 - Echvi_1114 0.70 +1.2
1,277,722 + Echvi_1114 0.70 +1.6
1,277,722 + Echvi_1114 0.70 +2.0
1,277,722 + Echvi_1114 0.70 -0.5
1,277,722 + Echvi_1114 0.70 -1.4
1,277,722 + Echvi_1114 0.70 -0.4
1,277,722 + Echvi_1114 0.70 +0.3
1,277,723 - Echvi_1114 0.71 -1.1
1,277,761 + Echvi_1114 0.81 -0.9
1,277,761 + Echvi_1114 0.81 -0.4
1,277,761 + Echvi_1114 0.81 -1.8
1,277,761 + Echvi_1114 0.81 +1.6
1,277,761 + Echvi_1114 0.81 -1.4
1,277,762 - Echvi_1114 0.81 -0.4
1,277,802 - +0.3
1,277,802 - -2.0
1,277,802 - +0.1
1,277,833 - -1.9
1,277,843 + +0.4
1,277,931 - -1.9
1,277,942 + +2.3
1,277,980 + +1.0
1,277,980 + +0.3
1,277,980 + +0.4
1,277,980 + -0.0
1,277,981 - -0.9
1,277,981 - +1.3
1,278,031 - +0.0
1,278,054 - +0.2
1,278,054 - -0.3
1,278,054 - -0.2
1,278,083 + +0.1
1,278,084 - +1.7

Or see this region's nucleotide sequence