Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0722 and Echvi_0723 are separated by 59 nucleotides Echvi_0723 and Echvi_0724 are separated by 30 nucleotides Echvi_0724 and Echvi_0725 overlap by 4 nucleotides Echvi_0725 and Echvi_0726 overlap by 4 nucleotides Echvi_0726 and Echvi_0727 are separated by 11 nucleotides
Echvi_0722: Echvi_0722 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 812,825 to 814,201
_0722
Echvi_0723: Echvi_0723 - hypothetical protein, at 814,261 to 814,734
_0723
Echvi_0724: Echvi_0724 - hypothetical protein, at 814,765 to 815,304
_0724
Echvi_0725: Echvi_0725 - hypothetical protein, at 815,301 to 815,741
_0725
Echvi_0726: Echvi_0726 - RNA polymerase sigma factor, sigma-70 family, at 815,738 to 816,226
_0726
Echvi_0727: Echvi_0727 - hypothetical protein, at 816,238 to 816,489
_0727
Position (kb) 814
815
816 Strain fitness (log2 ratio) -2
-1
0
1
2 at 813.788 kb on + strand, within Echvi_0722 at 813.871 kb on - strand, within Echvi_0722 at 813.874 kb on + strand, within Echvi_0722 at 813.875 kb on - strand, within Echvi_0722 at 813.875 kb on - strand, within Echvi_0722 at 813.875 kb on - strand, within Echvi_0722 at 813.941 kb on - strand, within Echvi_0722 at 813.950 kb on - strand, within Echvi_0722 at 813.981 kb on + strand, within Echvi_0722 at 813.982 kb on - strand, within Echvi_0722 at 813.982 kb on - strand, within Echvi_0722 at 813.982 kb on - strand, within Echvi_0722 at 814.108 kb on - strand at 814.121 kb on + strand at 814.122 kb on - strand at 814.122 kb on - strand at 814.122 kb on - strand at 814.122 kb on - strand at 814.126 kb on + strand at 814.126 kb on + strand at 814.126 kb on + strand at 814.320 kb on + strand, within Echvi_0723 at 814.321 kb on - strand, within Echvi_0723 at 814.388 kb on + strand, within Echvi_0723 at 814.389 kb on - strand, within Echvi_0723 at 814.436 kb on + strand, within Echvi_0723 at 814.437 kb on - strand, within Echvi_0723 at 814.509 kb on + strand, within Echvi_0723 at 814.652 kb on + strand, within Echvi_0723 at 814.663 kb on + strand, within Echvi_0723 at 814.672 kb on - strand, within Echvi_0723 at 814.715 kb on - strand at 814.735 kb on - strand at 814.755 kb on - strand at 814.755 kb on - strand at 814.771 kb on - strand at 814.771 kb on - strand at 814.890 kb on + strand, within Echvi_0724 at 814.992 kb on - strand, within Echvi_0724 at 814.992 kb on - strand, within Echvi_0724 at 814.998 kb on + strand, within Echvi_0724 at 815.027 kb on + strand, within Echvi_0724 at 815.183 kb on + strand, within Echvi_0724 at 815.183 kb on + strand, within Echvi_0724 at 815.184 kb on - strand, within Echvi_0724 at 815.184 kb on - strand, within Echvi_0724 at 815.285 kb on - strand at 815.333 kb on + strand at 815.334 kb on - strand at 815.406 kb on - strand, within Echvi_0725 at 815.701 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.705 kb on - strand at 815.792 kb on - strand, within Echvi_0726 at 815.824 kb on + strand, within Echvi_0726 at 815.825 kb on - strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 816.166 kb on - strand, within Echvi_0726 at 816.202 kb on + strand at 816.202 kb on + strand at 816.203 kb on - strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.229 kb on - strand at 816.233 kb on - strand at 816.236 kb on + strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.246 kb on - strand at 816.250 kb on - strand at 816.253 kb on - strand at 816.276 kb on + strand, within Echvi_0727
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 813,788 + Echvi_0722 0.70 -0.2 813,871 - Echvi_0722 0.76 -0.8 813,874 + Echvi_0722 0.76 -0.6 813,875 - Echvi_0722 0.76 +0.8 813,875 - Echvi_0722 0.76 -1.0 813,875 - Echvi_0722 0.76 -0.4 813,941 - Echvi_0722 0.81 +0.3 813,950 - Echvi_0722 0.82 +0.1 813,981 + Echvi_0722 0.84 +2.0 813,982 - Echvi_0722 0.84 -0.9 813,982 - Echvi_0722 0.84 +0.5 813,982 - Echvi_0722 0.84 -0.9 814,108 - +0.4 814,121 + +0.2 814,122 - +0.1 814,122 - +0.1 814,122 - -0.2 814,122 - +0.4 814,126 + +0.1 814,126 + -1.2 814,126 + -0.2 814,320 + Echvi_0723 0.12 +0.9 814,321 - Echvi_0723 0.13 +0.5 814,388 + Echvi_0723 0.27 -1.1 814,389 - Echvi_0723 0.27 -0.8 814,436 + Echvi_0723 0.37 +0.4 814,437 - Echvi_0723 0.37 -1.0 814,509 + Echvi_0723 0.52 -0.2 814,652 + Echvi_0723 0.82 +0.2 814,663 + Echvi_0723 0.85 -1.4 814,672 - Echvi_0723 0.87 -1.4 814,715 - -0.8 814,735 - +0.8 814,755 - +1.6 814,755 - +0.4 814,771 - -1.8 814,771 - -1.1 814,890 + Echvi_0724 0.23 +1.0 814,992 - Echvi_0724 0.42 -1.8 814,992 - Echvi_0724 0.42 -2.2 814,998 + Echvi_0724 0.43 -0.6 815,027 + Echvi_0724 0.49 +0.1 815,183 + Echvi_0724 0.77 -1.8 815,183 + Echvi_0724 0.77 -0.2 815,184 - Echvi_0724 0.78 -0.5 815,184 - Echvi_0724 0.78 +0.6 815,285 - +2.2 815,333 + -0.6 815,334 - +0.2 815,406 - Echvi_0725 0.24 +0.2 815,701 + -0.4 815,704 + +0.7 815,704 + -1.2 815,704 + +1.1 815,705 - -1.1 815,792 - Echvi_0726 0.11 -0.5 815,824 + Echvi_0726 0.18 -1.0 815,825 - Echvi_0726 0.18 +0.2 815,826 + Echvi_0726 0.18 +0.0 815,826 + Echvi_0726 0.18 -0.3 815,827 - Echvi_0726 0.18 -0.4 815,827 - Echvi_0726 0.18 -0.9 815,827 - Echvi_0726 0.18 +0.6 815,827 - Echvi_0726 0.18 -0.3 815,914 + Echvi_0726 0.36 +0.9 815,914 + Echvi_0726 0.36 +0.1 815,914 + Echvi_0726 0.36 -0.3 815,914 + Echvi_0726 0.36 +0.3 815,990 + Echvi_0726 0.52 +1.1 815,990 + Echvi_0726 0.52 -0.5 815,990 + Echvi_0726 0.52 +0.3 816,166 - Echvi_0726 0.88 -0.2 816,202 + -0.7 816,202 + -0.0 816,203 - +0.7 816,204 + +0.1 816,204 + -1.0 816,204 + -0.3 816,204 + +0.6 816,204 + -0.1 816,205 - +0.9 816,205 - -2.2 816,205 - -0.4 816,205 - -0.4 816,205 - +0.8 816,205 - +1.2 816,205 - +0.0 816,229 - -0.9 816,233 - +1.5 816,236 + -1.4 816,237 - +0.9 816,237 - -0.8 816,237 - +0.9 816,246 - -1.6 816,250 - -1.9 816,253 - -0.0 816,276 + Echvi_0727 0.15 -0.4
Or see this region's nucleotide sequence