Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0641 and Echvi_0642 are separated by 653 nucleotides Echvi_0642 and Echvi_0643 are separated by 27 nucleotides
Echvi_0641: Echvi_0641 - Transposase and inactivated derivatives, at 724,173 to 725,405
_0641
Echvi_0642: Echvi_0642 - pseudouridine synthase, RluA family, at 726,059 to 727,153
_0642
Echvi_0643: Echvi_0643 - 1-aminocyclopropane-1-carboxylate deaminase, at 727,181 to 728,110
_0643
Position (kb) 726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 725.176 kb on - strand, within Echvi_0641 at 725.658 kb on - strand at 725.658 kb on - strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.668 kb on - strand at 725.682 kb on - strand at 725.688 kb on - strand at 725.698 kb on + strand at 725.699 kb on - strand at 725.708 kb on + strand at 725.773 kb on + strand at 725.773 kb on + strand at 725.773 kb on + strand at 725.774 kb on - strand at 725.774 kb on - strand at 725.776 kb on + strand at 725.777 kb on - strand at 725.808 kb on + strand at 725.992 kb on - strand at 725.999 kb on - strand at 726.078 kb on + strand at 726.208 kb on + strand, within Echvi_0642 at 726.209 kb on - strand, within Echvi_0642 at 726.235 kb on - strand, within Echvi_0642 at 726.309 kb on + strand, within Echvi_0642 at 726.375 kb on + strand at 726.376 kb on - strand at 726.376 kb on - strand, within Echvi_0642 at 726.418 kb on + strand, within Echvi_0642 at 726.440 kb on + strand, within Echvi_0642 at 726.532 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.735 kb on + strand, within Echvi_0642 at 726.827 kb on + strand, within Echvi_0642 at 726.827 kb on + strand, within Echvi_0642 at 726.827 kb on + strand, within Echvi_0642 at 726.828 kb on - strand, within Echvi_0642 at 726.854 kb on + strand, within Echvi_0642 at 726.889 kb on + strand, within Echvi_0642 at 726.923 kb on - strand, within Echvi_0642 at 727.031 kb on + strand, within Echvi_0642 at 727.032 kb on - strand, within Echvi_0642 at 727.036 kb on + strand, within Echvi_0642 at 727.036 kb on + strand, within Echvi_0642 at 727.036 kb on + strand, within Echvi_0642 at 727.047 kb on + strand at 727.146 kb on - strand at 727.185 kb on + strand at 727.185 kb on + strand at 727.317 kb on - strand, within Echvi_0643 at 727.325 kb on - strand, within Echvi_0643 at 727.328 kb on + strand, within Echvi_0643 at 727.368 kb on + strand, within Echvi_0643 at 727.399 kb on + strand, within Echvi_0643 at 727.400 kb on - strand, within Echvi_0643 at 727.400 kb on - strand, within Echvi_0643 at 727.604 kb on + strand, within Echvi_0643 at 727.649 kb on - strand, within Echvi_0643 at 727.649 kb on - strand, within Echvi_0643 at 727.649 kb on - strand, within Echvi_0643 at 727.691 kb on - strand, within Echvi_0643 at 727.691 kb on - strand, within Echvi_0643 at 727.975 kb on - strand, within Echvi_0643 at 727.975 kb on - strand, within Echvi_0643 at 727.997 kb on - strand, within Echvi_0643 at 727.999 kb on + strand, within Echvi_0643 at 727.999 kb on + strand, within Echvi_0643 at 728.064 kb on + strand at 728.064 kb on + strand at 728.065 kb on - strand at 728.065 kb on - strand at 728.065 kb on - strand at 728.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 725,176 - Echvi_0641 0.81 -0.1 725,658 - +0.9 725,658 - +0.2 725,667 + -0.4 725,667 + -0.6 725,668 - +0.9 725,682 - -0.2 725,688 - +0.0 725,698 + +0.2 725,699 - -0.7 725,708 + +0.5 725,773 + +0.0 725,773 + -0.5 725,773 + -0.7 725,774 - +2.2 725,774 - +1.5 725,776 + +0.2 725,777 - +0.2 725,808 + -0.2 725,992 - -1.1 725,999 - -1.3 726,078 + +0.2 726,208 + Echvi_0642 0.14 +0.6 726,209 - Echvi_0642 0.14 +0.4 726,235 - Echvi_0642 0.16 -0.0 726,309 + Echvi_0642 0.23 +1.6 726,375 + +1.2 726,376 - +0.6 726,376 - Echvi_0642 0.29 -1.4 726,418 + Echvi_0642 0.33 +0.9 726,440 + Echvi_0642 0.35 -2.0 726,532 + Echvi_0642 0.43 -1.8 726,534 + Echvi_0642 0.43 -1.1 726,534 + Echvi_0642 0.43 -0.5 726,534 + Echvi_0642 0.43 -0.6 726,534 + Echvi_0642 0.43 -0.5 726,534 + Echvi_0642 0.43 -1.4 726,735 + Echvi_0642 0.62 +0.6 726,827 + Echvi_0642 0.70 -0.8 726,827 + Echvi_0642 0.70 +1.1 726,827 + Echvi_0642 0.70 -0.0 726,828 - Echvi_0642 0.70 +0.3 726,854 + Echvi_0642 0.73 -0.7 726,889 + Echvi_0642 0.76 -1.1 726,923 - Echvi_0642 0.79 +0.6 727,031 + Echvi_0642 0.89 +1.2 727,032 - Echvi_0642 0.89 +0.0 727,036 + Echvi_0642 0.89 +0.2 727,036 + Echvi_0642 0.89 -1.1 727,036 + Echvi_0642 0.89 -2.8 727,047 + +1.2 727,146 - -0.8 727,185 + -0.1 727,185 + -0.4 727,317 - Echvi_0643 0.15 -0.8 727,325 - Echvi_0643 0.15 +0.9 727,328 + Echvi_0643 0.16 -0.4 727,368 + Echvi_0643 0.20 -0.1 727,399 + Echvi_0643 0.23 -0.6 727,400 - Echvi_0643 0.24 +1.2 727,400 - Echvi_0643 0.24 +0.4 727,604 + Echvi_0643 0.45 +1.2 727,649 - Echvi_0643 0.50 +0.1 727,649 - Echvi_0643 0.50 +0.1 727,649 - Echvi_0643 0.50 -0.5 727,691 - Echvi_0643 0.55 +0.2 727,691 - Echvi_0643 0.55 -0.2 727,975 - Echvi_0643 0.85 -0.7 727,975 - Echvi_0643 0.85 +0.5 727,997 - Echvi_0643 0.88 +0.2 727,999 + Echvi_0643 0.88 -0.4 727,999 + Echvi_0643 0.88 -0.6 728,064 + +1.0 728,064 + -0.7 728,065 - -0.1 728,065 - +0.9 728,065 - +0.6 728,113 + +0.5
Or see this region's nucleotide sequence