Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0591

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0590 and Echvi_0591 are separated by 6 nucleotidesEchvi_0591 and Echvi_0592 are separated by 75 nucleotides Echvi_0590: Echvi_0590 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 668,095 to 669,210 _0590 Echvi_0591: Echvi_0591 - Molecular chaperone GrpE (heat shock protein), at 669,217 to 669,837 _0591 Echvi_0592: Echvi_0592 - Obg family GTPase CgtA, at 669,913 to 670,905 _0592 Position (kb) 669 670Strain fitness (log2 ratio) -2 -1 0 1 2at 668.366 kb on - strand, within Echvi_0590at 668.402 kb on + strand, within Echvi_0590at 668.403 kb on - strandat 668.411 kb on + strand, within Echvi_0590at 668.411 kb on + strand, within Echvi_0590at 668.443 kb on - strand, within Echvi_0590at 669.211 kb on - strandat 669.214 kb on - strandat 669.214 kb on - strandat 669.219 kb on - strandat 669.770 kb on - strand, within Echvi_0591at 669.770 kb on - strand, within Echvi_0591at 669.770 kb on - strand, within Echvi_0591at 669.805 kb on - strandat 669.805 kb on - strandat 669.805 kb on - strandat 669.823 kb on - strandat 669.838 kb on - strandat 669.838 kb on - strandat 669.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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668,366 - Echvi_0590 0.24 -0.1
668,402 + Echvi_0590 0.28 -2.4
668,403 - +0.6
668,411 + Echvi_0590 0.28 +0.1
668,411 + Echvi_0590 0.28 +1.1
668,443 - Echvi_0590 0.31 +0.6
669,211 - +0.5
669,214 - +1.2
669,214 - -0.8
669,219 - -0.9
669,770 - Echvi_0591 0.89 -2.3
669,770 - Echvi_0591 0.89 +0.2
669,770 - Echvi_0591 0.89 -0.7
669,805 - -1.7
669,805 - +0.2
669,805 - -1.3
669,823 - -1.5
669,838 - +0.0
669,838 - +2.2
669,838 - +0.0

Or see this region's nucleotide sequence