Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0503 and Echvi_0504 are separated by 321 nucleotides Echvi_0504 and Echvi_0505 are separated by 4 nucleotides Echvi_0505 and Echvi_0506 overlap by 10 nucleotides
Echvi_0503: Echvi_0503 - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) <small>(from data)</small>, at 560,214 to 560,918
_0503
Echvi_0504: Echvi_0504 - Signal transduction histidine kinase, at 561,240 to 564,401
_0504
Echvi_0505: Echvi_0505 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 564,406 to 564,996
_0505
Echvi_0506: Echvi_0506 - Predicted neuraminidase (sialidase), at 564,987 to 566,087
_0506
Position (kb) 561
562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 560.318 kb on + strand, within Echvi_0503 at 560.323 kb on + strand, within Echvi_0503 at 560.324 kb on - strand, within Echvi_0503 at 560.337 kb on + strand, within Echvi_0503 at 560.357 kb on + strand, within Echvi_0503 at 560.360 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.362 kb on + strand, within Echvi_0503 at 560.363 kb on - strand, within Echvi_0503 at 560.427 kb on + strand, within Echvi_0503 at 560.428 kb on - strand, within Echvi_0503 at 560.438 kb on - strand, within Echvi_0503 at 560.771 kb on - strand, within Echvi_0503 at 560.873 kb on + strand at 560.885 kb on - strand at 560.899 kb on - strand at 560.899 kb on - strand at 560.928 kb on - strand at 560.956 kb on - strand at 560.958 kb on - strand at 560.960 kb on - strand at 560.974 kb on - strand at 561.042 kb on + strand at 561.042 kb on + strand at 561.082 kb on - strand at 561.112 kb on - strand at 561.125 kb on + strand at 561.126 kb on - strand at 561.126 kb on - strand at 561.127 kb on + strand at 561.128 kb on - strand at 561.131 kb on + strand at 561.134 kb on - strand at 561.190 kb on + strand at 561.190 kb on + strand at 561.200 kb on + strand at 561.204 kb on + strand at 561.261 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.313 kb on + strand at 561.396 kb on + strand at 561.397 kb on - strand at 561.400 kb on + strand at 561.400 kb on + strand at 561.400 kb on + strand at 561.400 kb on + strand at 561.401 kb on - strand at 561.401 kb on - strand at 561.401 kb on - strand at 561.456 kb on + strand at 561.456 kb on + strand at 561.457 kb on - strand at 561.457 kb on - strand at 561.531 kb on - strand at 561.534 kb on - strand at 561.570 kb on + strand, within Echvi_0504 at 561.600 kb on + strand, within Echvi_0504 at 561.600 kb on + strand, within Echvi_0504 at 561.600 kb on + strand, within Echvi_0504 at 561.601 kb on - strand, within Echvi_0504 at 561.647 kb on - strand, within Echvi_0504 at 561.647 kb on - strand, within Echvi_0504 at 561.784 kb on + strand, within Echvi_0504 at 561.922 kb on - strand, within Echvi_0504 at 561.922 kb on - strand, within Echvi_0504 at 562.096 kb on + strand, within Echvi_0504 at 562.145 kb on + strand, within Echvi_0504 at 562.184 kb on + strand, within Echvi_0504 at 562.202 kb on + strand, within Echvi_0504 at 562.202 kb on + strand, within Echvi_0504 at 562.203 kb on - strand, within Echvi_0504 at 562.203 kb on - strand, within Echvi_0504 at 562.206 kb on + strand, within Echvi_0504 at 562.206 kb on + strand, within Echvi_0504 at 562.206 kb on + strand, within Echvi_0504 at 562.207 kb on - strand, within Echvi_0504 at 562.207 kb on - strand, within Echvi_0504 at 562.251 kb on + strand, within Echvi_0504 at 562.252 kb on - strand, within Echvi_0504 at 562.289 kb on + strand, within Echvi_0504 at 562.296 kb on - strand, within Echvi_0504 at 562.332 kb on + strand, within Echvi_0504 at 562.332 kb on + strand, within Echvi_0504 at 562.332 kb on + strand, within Echvi_0504 at 562.333 kb on - strand, within Echvi_0504 at 562.333 kb on - strand, within Echvi_0504 at 562.335 kb on + strand, within Echvi_0504 at 562.336 kb on - strand, within Echvi_0504 at 562.336 kb on - strand, within Echvi_0504 at 562.392 kb on + strand, within Echvi_0504 at 562.393 kb on - strand, within Echvi_0504 at 562.440 kb on + strand, within Echvi_0504 at 562.440 kb on + strand, within Echvi_0504 at 562.441 kb on - strand, within Echvi_0504 at 562.441 kb on - strand, within Echvi_0504 at 562.441 kb on - strand, within Echvi_0504 at 562.472 kb on - strand, within Echvi_0504 at 562.661 kb on - strand, within Echvi_0504 at 562.681 kb on + strand, within Echvi_0504 at 562.682 kb on - strand, within Echvi_0504 at 562.682 kb on - strand, within Echvi_0504 at 562.775 kb on + strand, within Echvi_0504 at 562.807 kb on + strand, within Echvi_0504 at 562.836 kb on - strand, within Echvi_0504 at 562.856 kb on + strand, within Echvi_0504 at 562.871 kb on + strand, within Echvi_0504 at 562.871 kb on + strand, within Echvi_0504 at 562.895 kb on + strand, within Echvi_0504 at 562.895 kb on + strand, within Echvi_0504 at 562.898 kb on + strand, within Echvi_0504 at 562.991 kb on + strand, within Echvi_0504 at 563.027 kb on + strand, within Echvi_0504 at 563.028 kb on - strand, within Echvi_0504 at 563.131 kb on - strand, within Echvi_0504 at 563.160 kb on + strand, within Echvi_0504 at 563.160 kb on + strand, within Echvi_0504 at 563.160 kb on + strand at 563.181 kb on + strand, within Echvi_0504 at 563.181 kb on + strand, within Echvi_0504 at 563.182 kb on - strand, within Echvi_0504 at 563.182 kb on - strand, within Echvi_0504 at 563.184 kb on - strand, within Echvi_0504 at 563.233 kb on - strand, within Echvi_0504 at 563.261 kb on + strand, within Echvi_0504 at 563.304 kb on - strand, within Echvi_0504 at 563.339 kb on - strand, within Echvi_0504 at 563.358 kb on + strand, within Echvi_0504 at 563.359 kb on - strand, within Echvi_0504 at 563.438 kb on + strand, within Echvi_0504 at 563.438 kb on + strand, within Echvi_0504 at 563.461 kb on + strand, within Echvi_0504 at 563.461 kb on + strand, within Echvi_0504 at 563.474 kb on + strand, within Echvi_0504 at 563.474 kb on + strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.475 kb on - strand, within Echvi_0504 at 563.514 kb on + strand, within Echvi_0504 at 563.514 kb on + strand, within Echvi_0504 at 563.538 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.540 kb on + strand, within Echvi_0504 at 563.541 kb on - strand, within Echvi_0504 at 563.541 kb on - strand, within Echvi_0504 at 563.541 kb on - strand, within Echvi_0504 at 563.606 kb on + strand, within Echvi_0504 at 563.606 kb on + strand, within Echvi_0504 at 563.606 kb on + strand, within Echvi_0504 at 563.607 kb on - strand, within Echvi_0504 at 563.625 kb on + strand, within Echvi_0504 at 563.688 kb on + strand, within Echvi_0504 at 563.689 kb on - strand, within Echvi_0504 at 563.982 kb on + strand, within Echvi_0504 at 563.983 kb on - strand, within Echvi_0504 at 564.014 kb on + strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.022 kb on - strand, within Echvi_0504 at 564.047 kb on - strand, within Echvi_0504 at 564.085 kb on - strand at 564.086 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.182 kb on - strand at 564.355 kb on + strand at 564.355 kb on + strand at 564.356 kb on - strand at 564.356 kb on - strand at 564.386 kb on + strand at 564.399 kb on + strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.400 kb on - strand at 564.425 kb on + strand at 564.426 kb on - strand at 564.434 kb on + strand at 564.435 kb on - strand at 564.473 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.500 kb on + strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.501 kb on - strand, within Echvi_0505 at 564.580 kb on - strand, within Echvi_0505 at 564.592 kb on - strand, within Echvi_0505 at 564.727 kb on + strand, within Echvi_0505 at 564.825 kb on + strand, within Echvi_0505 at 564.899 kb on - strand, within Echvi_0505 at 564.957 kb on + strand at 564.957 kb on + strand at 564.958 kb on - strand at 564.974 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.988 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.003 kb on - strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.043 kb on + strand at 565.045 kb on + strand at 565.052 kb on + strand at 565.053 kb on - strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.056 kb on + strand at 565.218 kb on - strand, within Echvi_0506 at 565.218 kb on - strand, within Echvi_0506 at 565.219 kb on + strand, within Echvi_0506 at 565.220 kb on - strand, within Echvi_0506 at 565.227 kb on + strand, within Echvi_0506 at 565.279 kb on - strand, within Echvi_0506 at 565.310 kb on + strand, within Echvi_0506 at 565.311 kb on - strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.398 kb on + strand, within Echvi_0506 at 565.399 kb on - strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506 at 565.400 kb on + strand, within Echvi_0506
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 560,318 + Echvi_0503 0.15 -0.4 560,323 + Echvi_0503 0.15 +0.2 560,324 - Echvi_0503 0.16 -0.4 560,337 + Echvi_0503 0.17 -0.4 560,357 + Echvi_0503 0.20 +0.4 560,360 + Echvi_0503 0.21 -0.1 560,362 + Echvi_0503 0.21 +0.7 560,362 + Echvi_0503 0.21 -0.3 560,362 + Echvi_0503 0.21 -0.2 560,362 + Echvi_0503 0.21 +0.4 560,363 - Echvi_0503 0.21 -0.4 560,427 + Echvi_0503 0.30 -1.2 560,428 - Echvi_0503 0.30 -0.9 560,438 - Echvi_0503 0.32 -0.7 560,771 - Echvi_0503 0.79 -0.2 560,873 + +1.6 560,885 - +1.1 560,899 - -1.0 560,899 - -0.4 560,928 - +0.1 560,956 - -1.0 560,958 - +0.1 560,960 - -0.8 560,974 - +0.1 561,042 + +1.3 561,042 + -0.3 561,082 - -1.6 561,112 - +0.6 561,125 + -0.7 561,126 - +2.1 561,126 - +0.5 561,127 + -0.6 561,128 - +0.0 561,131 + +0.7 561,134 - -0.7 561,190 + -0.9 561,190 + -0.9 561,200 + -0.2 561,204 + -0.7 561,261 + -0.7 561,313 + -0.1 561,313 + -0.3 561,313 + -0.3 561,313 + +0.3 561,313 + -1.5 561,313 + +0.8 561,313 + -1.2 561,396 + -0.4 561,397 - -0.2 561,400 + -0.5 561,400 + -0.2 561,400 + -0.2 561,400 + -1.9 561,401 - +0.3 561,401 - +1.1 561,401 - +0.7 561,456 + +0.0 561,456 + -1.4 561,457 - +0.8 561,457 - -0.2 561,531 - -0.2 561,534 - -1.4 561,570 + Echvi_0504 0.10 +0.7 561,600 + Echvi_0504 0.11 +0.6 561,600 + Echvi_0504 0.11 -0.6 561,600 + Echvi_0504 0.11 +0.8 561,601 - Echvi_0504 0.11 -0.5 561,647 - Echvi_0504 0.13 -2.8 561,647 - Echvi_0504 0.13 -0.2 561,784 + Echvi_0504 0.17 +0.7 561,922 - Echvi_0504 0.22 +0.4 561,922 - Echvi_0504 0.22 -1.3 562,096 + Echvi_0504 0.27 +0.3 562,145 + Echvi_0504 0.29 -1.4 562,184 + Echvi_0504 0.30 +0.8 562,202 + Echvi_0504 0.30 -2.2 562,202 + Echvi_0504 0.30 +0.6 562,203 - Echvi_0504 0.30 -0.2 562,203 - Echvi_0504 0.30 -0.3 562,206 + Echvi_0504 0.31 -0.6 562,206 + Echvi_0504 0.31 -0.4 562,206 + Echvi_0504 0.31 -0.9 562,207 - Echvi_0504 0.31 -0.2 562,207 - Echvi_0504 0.31 +0.5 562,251 + Echvi_0504 0.32 +1.4 562,252 - Echvi_0504 0.32 -0.1 562,289 + Echvi_0504 0.33 +2.1 562,296 - Echvi_0504 0.33 -1.3 562,332 + Echvi_0504 0.35 +0.5 562,332 + Echvi_0504 0.35 -0.7 562,332 + Echvi_0504 0.35 -0.6 562,333 - Echvi_0504 0.35 +2.1 562,333 - Echvi_0504 0.35 +0.1 562,335 + Echvi_0504 0.35 -0.3 562,336 - Echvi_0504 0.35 -2.0 562,336 - Echvi_0504 0.35 +0.2 562,392 + Echvi_0504 0.36 -0.9 562,393 - Echvi_0504 0.36 -0.0 562,440 + Echvi_0504 0.38 +0.7 562,440 + Echvi_0504 0.38 -1.3 562,441 - Echvi_0504 0.38 -0.3 562,441 - Echvi_0504 0.38 -1.5 562,441 - Echvi_0504 0.38 +0.3 562,472 - Echvi_0504 0.39 +0.6 562,661 - Echvi_0504 0.45 -0.1 562,681 + Echvi_0504 0.46 -0.4 562,682 - Echvi_0504 0.46 -0.5 562,682 - Echvi_0504 0.46 -1.8 562,775 + Echvi_0504 0.49 -0.3 562,807 + Echvi_0504 0.50 -0.7 562,836 - Echvi_0504 0.50 +0.7 562,856 + Echvi_0504 0.51 +2.4 562,871 + Echvi_0504 0.52 +0.4 562,871 + Echvi_0504 0.52 -0.3 562,895 + Echvi_0504 0.52 +0.5 562,895 + Echvi_0504 0.52 -0.5 562,898 + Echvi_0504 0.52 -0.5 562,991 + Echvi_0504 0.55 -1.1 563,027 + Echvi_0504 0.57 -2.2 563,028 - Echvi_0504 0.57 -1.0 563,131 - Echvi_0504 0.60 +0.2 563,160 + Echvi_0504 0.61 -0.4 563,160 + Echvi_0504 0.61 -0.9 563,160 + +3.7 563,181 + Echvi_0504 0.61 -0.9 563,181 + Echvi_0504 0.61 +0.1 563,182 - Echvi_0504 0.61 +2.1 563,182 - Echvi_0504 0.61 +0.1 563,184 - Echvi_0504 0.61 +0.3 563,233 - Echvi_0504 0.63 -0.1 563,261 + Echvi_0504 0.64 -0.7 563,304 - Echvi_0504 0.65 -1.2 563,339 - Echvi_0504 0.66 -0.4 563,358 + Echvi_0504 0.67 -0.0 563,359 - Echvi_0504 0.67 -2.9 563,438 + Echvi_0504 0.70 +0.9 563,438 + Echvi_0504 0.70 -0.3 563,461 + Echvi_0504 0.70 -0.3 563,461 + Echvi_0504 0.70 -0.0 563,474 + Echvi_0504 0.71 -0.4 563,474 + Echvi_0504 0.71 -2.2 563,475 - Echvi_0504 0.71 -0.6 563,475 - Echvi_0504 0.71 -0.7 563,475 - Echvi_0504 0.71 -0.1 563,475 - Echvi_0504 0.71 -0.2 563,475 - Echvi_0504 0.71 -0.0 563,514 + Echvi_0504 0.72 -0.9 563,514 + Echvi_0504 0.72 -1.0 563,538 + Echvi_0504 0.73 -0.4 563,540 + Echvi_0504 0.73 -0.3 563,540 + Echvi_0504 0.73 -0.5 563,540 + Echvi_0504 0.73 +0.3 563,540 + Echvi_0504 0.73 +0.3 563,540 + Echvi_0504 0.73 -1.2 563,541 - Echvi_0504 0.73 -1.9 563,541 - Echvi_0504 0.73 +0.8 563,541 - Echvi_0504 0.73 -0.1 563,606 + Echvi_0504 0.75 -0.0 563,606 + Echvi_0504 0.75 +0.7 563,606 + Echvi_0504 0.75 -0.9 563,607 - Echvi_0504 0.75 -2.8 563,625 + Echvi_0504 0.75 +0.0 563,688 + Echvi_0504 0.77 +1.4 563,689 - Echvi_0504 0.77 -1.3 563,982 + Echvi_0504 0.87 -0.6 563,983 - Echvi_0504 0.87 -0.9 564,014 + Echvi_0504 0.88 +0.2 564,022 - Echvi_0504 0.88 +1.1 564,022 - Echvi_0504 0.88 -0.3 564,047 - Echvi_0504 0.89 -0.7 564,085 - +0.1 564,086 + -1.2 564,181 + -0.1 564,181 + -0.7 564,181 + -0.1 564,182 - +0.4 564,182 - +0.4 564,182 - +0.8 564,355 + +0.1 564,355 + -1.1 564,356 - -0.7 564,356 - -0.9 564,386 + -0.5 564,399 + +0.6 564,400 - +0.6 564,400 - +0.3 564,400 - -0.3 564,425 + -0.8 564,426 - +0.3 564,434 + -0.6 564,435 - +0.1 564,473 + Echvi_0505 0.11 +1.9 564,500 + Echvi_0505 0.16 +0.0 564,500 + Echvi_0505 0.16 -0.1 564,500 + Echvi_0505 0.16 -0.3 564,501 - Echvi_0505 0.16 +1.0 564,501 - Echvi_0505 0.16 -0.4 564,501 - Echvi_0505 0.16 -0.4 564,501 - Echvi_0505 0.16 -0.2 564,501 - Echvi_0505 0.16 +1.2 564,580 - Echvi_0505 0.29 +0.4 564,592 - Echvi_0505 0.31 +0.4 564,727 + Echvi_0505 0.54 +0.2 564,825 + Echvi_0505 0.71 +0.7 564,899 - Echvi_0505 0.83 +0.3 564,957 + -1.2 564,957 + +0.3 564,958 - -0.6 564,974 + -1.7 564,988 + -1.1 564,988 + -0.8 564,988 + -1.2 564,999 + -2.2 564,999 + -0.7 564,999 + -0.2 565,000 - +0.2 565,000 - +1.3 565,003 - +0.4 565,043 + -1.1 565,043 + -1.9 565,043 + -0.7 565,045 + -0.0 565,052 + +0.4 565,053 - +0.2 565,056 + +0.4 565,056 + +1.4 565,056 + +1.0 565,218 - Echvi_0506 0.21 +0.2 565,218 - Echvi_0506 0.21 +0.8 565,219 + Echvi_0506 0.21 -0.5 565,220 - Echvi_0506 0.21 +0.6 565,227 + Echvi_0506 0.22 -1.2 565,279 - Echvi_0506 0.27 +0.9 565,310 + Echvi_0506 0.29 +0.4 565,311 - Echvi_0506 0.29 -0.7 565,398 + Echvi_0506 0.37 -1.3 565,398 + Echvi_0506 0.37 -0.4 565,399 - Echvi_0506 0.37 -0.8 565,400 + Echvi_0506 0.38 -0.8 565,400 + Echvi_0506 0.38 +0.6 565,400 + Echvi_0506 0.38 +0.2 565,400 + Echvi_0506 0.38 -1.0
Or see this region's nucleotide sequence