Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0352 and Echvi_0353 are separated by 5 nucleotides Echvi_0353 and Echvi_0354 are separated by 411 nucleotides Echvi_0354 and Echvi_0355 are separated by 4 nucleotides
Echvi_0352: Echvi_0352 - hypothetical protein, at 374,750 to 379,777
_0352
Echvi_0353: Echvi_0353 - hypothetical protein, at 379,783 to 380,916
_0353
Echvi_0354: Echvi_0354 - Predicted transcriptional regulators, at 381,328 to 381,657
_0354
Echvi_0355: Echvi_0355 - Putative stress-responsive transcriptional regulator, at 381,662 to 383,569
_0355
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 378.810 kb on - strand, within Echvi_0352 at 378.898 kb on + strand, within Echvi_0352 at 378.900 kb on + strand, within Echvi_0352 at 378.901 kb on - strand, within Echvi_0352 at 378.940 kb on + strand, within Echvi_0352 at 378.953 kb on + strand, within Echvi_0352 at 378.954 kb on - strand, within Echvi_0352 at 378.954 kb on - strand, within Echvi_0352 at 379.005 kb on + strand, within Echvi_0352 at 379.006 kb on - strand, within Echvi_0352 at 379.015 kb on - strand, within Echvi_0352 at 379.049 kb on - strand, within Echvi_0352 at 379.078 kb on - strand, within Echvi_0352 at 379.169 kb on - strand, within Echvi_0352 at 379.228 kb on + strand, within Echvi_0352 at 379.228 kb on + strand, within Echvi_0352 at 379.234 kb on - strand, within Echvi_0352 at 379.279 kb on - strand at 379.414 kb on + strand at 379.420 kb on + strand at 379.425 kb on + strand at 379.425 kb on + strand at 379.459 kb on - strand at 379.509 kb on + strand at 379.509 kb on + strand at 379.510 kb on - strand at 379.510 kb on - strand at 379.551 kb on + strand at 379.552 kb on - strand at 379.578 kb on + strand at 379.578 kb on + strand at 379.578 kb on + strand at 379.579 kb on - strand at 379.579 kb on - strand at 379.579 kb on - strand at 379.579 kb on - strand at 379.585 kb on + strand at 379.586 kb on - strand at 379.647 kb on - strand at 379.651 kb on + strand at 379.652 kb on - strand at 379.653 kb on + strand at 379.681 kb on + strand at 379.681 kb on + strand at 379.681 kb on + strand at 379.683 kb on + strand at 379.683 kb on + strand at 379.684 kb on - strand at 379.686 kb on + strand at 379.686 kb on + strand at 379.698 kb on + strand at 379.699 kb on - strand at 379.758 kb on - strand at 379.758 kb on - strand at 379.834 kb on + strand at 379.840 kb on - strand at 379.851 kb on + strand at 379.865 kb on + strand at 379.866 kb on - strand at 379.904 kb on + strand, within Echvi_0353 at 379.913 kb on + strand, within Echvi_0353 at 379.913 kb on + strand, within Echvi_0353 at 379.914 kb on - strand, within Echvi_0353 at 379.994 kb on + strand, within Echvi_0353 at 380.025 kb on - strand, within Echvi_0353 at 380.039 kb on + strand, within Echvi_0353 at 380.236 kb on - strand, within Echvi_0353 at 380.236 kb on - strand, within Echvi_0353 at 380.249 kb on + strand, within Echvi_0353 at 380.250 kb on - strand, within Echvi_0353 at 380.250 kb on - strand, within Echvi_0353 at 380.251 kb on + strand, within Echvi_0353 at 380.251 kb on + strand, within Echvi_0353 at 380.251 kb on + strand, within Echvi_0353 at 380.251 kb on + strand, within Echvi_0353 at 380.251 kb on + strand, within Echvi_0353 at 380.251 kb on + strand, within Echvi_0353 at 380.274 kb on + strand, within Echvi_0353 at 380.289 kb on + strand, within Echvi_0353 at 380.311 kb on + strand, within Echvi_0353 at 380.311 kb on + strand, within Echvi_0353 at 380.312 kb on - strand, within Echvi_0353 at 380.335 kb on - strand, within Echvi_0353 at 380.356 kb on + strand, within Echvi_0353 at 380.356 kb on + strand, within Echvi_0353 at 380.357 kb on - strand, within Echvi_0353 at 380.418 kb on + strand, within Echvi_0353 at 380.459 kb on + strand, within Echvi_0353 at 380.460 kb on - strand, within Echvi_0353 at 380.460 kb on - strand, within Echvi_0353 at 380.490 kb on + strand, within Echvi_0353 at 380.505 kb on + strand, within Echvi_0353 at 380.506 kb on - strand, within Echvi_0353 at 380.506 kb on - strand, within Echvi_0353 at 380.506 kb on - strand, within Echvi_0353 at 380.536 kb on + strand, within Echvi_0353 at 380.537 kb on - strand, within Echvi_0353 at 380.556 kb on + strand, within Echvi_0353 at 380.556 kb on + strand, within Echvi_0353 at 380.557 kb on - strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.608 kb on + strand, within Echvi_0353 at 380.609 kb on - strand, within Echvi_0353 at 380.609 kb on - strand, within Echvi_0353 at 380.609 kb on - strand, within Echvi_0353 at 380.617 kb on - strand, within Echvi_0353 at 380.636 kb on + strand, within Echvi_0353 at 380.684 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.752 kb on + strand, within Echvi_0353 at 380.802 kb on + strand, within Echvi_0353 at 380.803 kb on - strand at 380.816 kb on + strand at 380.842 kb on + strand at 380.842 kb on + strand at 380.843 kb on - strand at 380.843 kb on - strand at 380.848 kb on + strand at 380.849 kb on - strand at 380.849 kb on - strand at 380.879 kb on - strand at 380.889 kb on + strand at 380.969 kb on + strand at 381.047 kb on - strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.136 kb on - strand at 381.136 kb on - strand at 381.190 kb on - strand at 381.236 kb on + strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.307 kb on + strand at 381.308 kb on - strand at 381.312 kb on + strand at 381.312 kb on + strand at 381.350 kb on + strand at 381.350 kb on + strand at 381.351 kb on - strand at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.412 kb on + strand at 381.413 kb on - strand, within Echvi_0354 at 381.413 kb on - strand, within Echvi_0354 at 381.453 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.475 kb on + strand, within Echvi_0354 at 381.476 kb on - strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.559 kb on + strand, within Echvi_0354 at 381.631 kb on - strand at 381.631 kb on - strand at 381.631 kb on - strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.676 kb on - strand at 381.676 kb on - strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.686 kb on - strand at 381.706 kb on + strand at 381.751 kb on + strand at 381.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 378,810 - Echvi_0352 0.81 +0.5 378,898 + Echvi_0352 0.82 -0.2 378,900 + Echvi_0352 0.83 +0.6 378,901 - Echvi_0352 0.83 +2.1 378,940 + Echvi_0352 0.83 -0.5 378,953 + Echvi_0352 0.84 -0.5 378,954 - Echvi_0352 0.84 -0.9 378,954 - Echvi_0352 0.84 +0.3 379,005 + Echvi_0352 0.85 +0.7 379,006 - Echvi_0352 0.85 -0.2 379,015 - Echvi_0352 0.85 -1.6 379,049 - Echvi_0352 0.86 -0.6 379,078 - Echvi_0352 0.86 -0.2 379,169 - Echvi_0352 0.88 -0.7 379,228 + Echvi_0352 0.89 -1.0 379,228 + Echvi_0352 0.89 -1.0 379,234 - Echvi_0352 0.89 +1.5 379,279 - -1.2 379,414 + -0.5 379,420 + -0.3 379,425 + -0.1 379,425 + +0.2 379,459 - +0.6 379,509 + +2.1 379,509 + -0.2 379,510 - -0.5 379,510 - -0.2 379,551 + -1.3 379,552 - +0.2 379,578 + +0.1 379,578 + +0.5 379,578 + -0.4 379,579 - +1.0 379,579 - +1.9 379,579 - -1.5 379,579 - +1.1 379,585 + +0.1 379,586 - +0.4 379,647 - +0.1 379,651 + +0.9 379,652 - -0.0 379,653 + +0.1 379,681 + +0.3 379,681 + -1.0 379,681 + -0.5 379,683 + -0.9 379,683 + -0.6 379,684 - +0.4 379,686 + +0.5 379,686 + -0.1 379,698 + +0.0 379,699 - -0.4 379,758 - +0.3 379,758 - -2.0 379,834 + -0.8 379,840 - +0.8 379,851 + +0.9 379,865 + +2.1 379,866 - -1.5 379,904 + Echvi_0353 0.11 +0.0 379,913 + Echvi_0353 0.11 -0.8 379,913 + Echvi_0353 0.11 +0.4 379,914 - Echvi_0353 0.12 +0.9 379,994 + Echvi_0353 0.19 +1.2 380,025 - Echvi_0353 0.21 -0.3 380,039 + Echvi_0353 0.23 +0.5 380,236 - Echvi_0353 0.40 -0.7 380,236 - Echvi_0353 0.40 -0.1 380,249 + Echvi_0353 0.41 +1.4 380,250 - Echvi_0353 0.41 +1.0 380,250 - Echvi_0353 0.41 +0.4 380,251 + Echvi_0353 0.41 -0.4 380,251 + Echvi_0353 0.41 -0.3 380,251 + Echvi_0353 0.41 +0.2 380,251 + Echvi_0353 0.41 +1.0 380,251 + Echvi_0353 0.41 +0.3 380,251 + Echvi_0353 0.41 -0.2 380,274 + Echvi_0353 0.43 +1.9 380,289 + Echvi_0353 0.45 -0.3 380,311 + Echvi_0353 0.47 +1.1 380,311 + Echvi_0353 0.47 -0.0 380,312 - Echvi_0353 0.47 -0.1 380,335 - Echvi_0353 0.49 +0.7 380,356 + Echvi_0353 0.51 +0.2 380,356 + Echvi_0353 0.51 +1.4 380,357 - Echvi_0353 0.51 +0.9 380,418 + Echvi_0353 0.56 +2.1 380,459 + Echvi_0353 0.60 +0.6 380,460 - Echvi_0353 0.60 -0.2 380,460 - Echvi_0353 0.60 -0.9 380,490 + Echvi_0353 0.62 +0.6 380,505 + Echvi_0353 0.64 +0.8 380,506 - Echvi_0353 0.64 +0.7 380,506 - Echvi_0353 0.64 -1.7 380,506 - Echvi_0353 0.64 +0.1 380,536 + Echvi_0353 0.66 +1.0 380,537 - Echvi_0353 0.66 +0.9 380,556 + Echvi_0353 0.68 -0.9 380,556 + Echvi_0353 0.68 +0.5 380,557 - Echvi_0353 0.68 +1.5 380,608 + Echvi_0353 0.73 +1.0 380,608 + Echvi_0353 0.73 +2.1 380,608 + Echvi_0353 0.73 +0.4 380,608 + Echvi_0353 0.73 +1.4 380,609 - Echvi_0353 0.73 -0.1 380,609 - Echvi_0353 0.73 +0.6 380,609 - Echvi_0353 0.73 -0.1 380,617 - Echvi_0353 0.74 -2.0 380,636 + Echvi_0353 0.75 -0.7 380,684 + Echvi_0353 0.79 -0.2 380,688 + Echvi_0353 0.80 +0.6 380,688 + Echvi_0353 0.80 +0.1 380,688 + Echvi_0353 0.80 +0.8 380,688 + Echvi_0353 0.80 -0.4 380,688 + Echvi_0353 0.80 -1.3 380,688 + Echvi_0353 0.80 -0.6 380,689 - Echvi_0353 0.80 -2.0 380,689 - Echvi_0353 0.80 -1.7 380,689 - Echvi_0353 0.80 +0.0 380,752 + Echvi_0353 0.85 +0.8 380,802 + Echvi_0353 0.90 +0.2 380,803 - +0.1 380,816 + +0.7 380,842 + -0.5 380,842 + +0.5 380,843 - -0.5 380,843 - -0.1 380,848 + -0.3 380,849 - -2.1 380,849 - +0.3 380,879 - +3.1 380,889 + +0.1 380,969 + -0.9 381,047 - -2.2 381,048 + -0.4 381,048 + -0.5 381,048 + +0.5 381,048 + +0.4 381,048 + +0.2 381,049 - +0.9 381,049 - -0.4 381,049 - -1.8 381,049 - -1.0 381,049 - +0.0 381,136 - -0.9 381,136 - -0.7 381,190 - -1.0 381,236 + -1.0 381,237 - -0.2 381,237 - +0.7 381,237 - +1.5 381,284 - -1.5 381,284 - +0.5 381,284 - -1.3 381,284 - +0.7 381,307 + +2.1 381,308 - +0.7 381,312 + -0.7 381,312 + -1.8 381,350 + -1.9 381,350 + +0.5 381,351 - +0.5 381,410 + Echvi_0354 0.25 +0.1 381,410 + Echvi_0354 0.25 -2.0 381,410 + Echvi_0354 0.25 +0.5 381,410 + Echvi_0354 0.25 -0.7 381,410 + Echvi_0354 0.25 -0.7 381,410 + Echvi_0354 0.25 +2.1 381,411 - Echvi_0354 0.25 -1.2 381,411 - Echvi_0354 0.25 -0.0 381,411 - Echvi_0354 0.25 -0.9 381,411 - Echvi_0354 0.25 +0.7 381,411 - Echvi_0354 0.25 +0.1 381,411 - Echvi_0354 0.25 +0.0 381,412 + +1.5 381,413 - Echvi_0354 0.26 -0.2 381,413 - Echvi_0354 0.26 -0.2 381,453 - Echvi_0354 0.38 -0.4 381,462 - Echvi_0354 0.41 +0.4 381,462 - Echvi_0354 0.41 -0.9 381,475 + Echvi_0354 0.45 -0.3 381,476 - Echvi_0354 0.45 +0.8 381,517 + Echvi_0354 0.57 -0.2 381,517 + Echvi_0354 0.57 -1.3 381,518 - Echvi_0354 0.58 +0.1 381,518 - Echvi_0354 0.58 -1.4 381,559 + Echvi_0354 0.70 +0.1 381,631 - +1.1 381,631 - +0.2 381,631 - +0.5 381,675 + -0.7 381,675 + -1.0 381,675 + -0.4 381,676 - -0.0 381,676 - +0.3 381,681 + -0.2 381,681 + +0.6 381,681 + -0.2 381,682 - -1.0 381,682 - +0.1 381,682 - -0.2 381,682 - -0.5 381,686 - +0.3 381,706 + -0.2 381,751 + -0.9 381,794 - +0.0
Or see this region's nucleotide sequence