Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0275

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0274 and Echvi_0275 are separated by 48 nucleotidesEchvi_0275 and Echvi_0276 are separated by 100 nucleotidesEchvi_0276 and Echvi_0277 are separated by 12 nucleotides Echvi_0274: Echvi_0274 - Aminopeptidase N, at 276,586 to 279,156 _0274 Echvi_0275: Echvi_0275 - Acetyl/propionyl-CoA carboxylase, alpha subunit, at 279,205 to 279,699 _0275 Echvi_0276: Echvi_0276 - uridylate kinase, at 279,800 to 280,510 _0276 Echvi_0277: Echvi_0277 - ribosome recycling factor, at 280,523 to 281,083 _0277 Position (kb) 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 278.210 kb on + strand, within Echvi_0274at 278.210 kb on + strand, within Echvi_0274at 278.211 kb on - strand, within Echvi_0274at 278.318 kb on + strand, within Echvi_0274at 278.319 kb on - strand, within Echvi_0274at 278.319 kb on - strand, within Echvi_0274at 278.322 kb on - strand, within Echvi_0274at 278.322 kb on - strand, within Echvi_0274at 278.590 kb on + strand, within Echvi_0274at 278.633 kb on + strand, within Echvi_0274at 278.676 kb on + strand, within Echvi_0274at 278.677 kb on - strand, within Echvi_0274at 278.721 kb on + strand, within Echvi_0274at 278.739 kb on + strand, within Echvi_0274at 278.740 kb on - strand, within Echvi_0274at 278.759 kb on - strand, within Echvi_0274at 278.775 kb on - strand, within Echvi_0274at 278.778 kb on + strand, within Echvi_0274at 278.944 kb on - strandat 278.944 kb on - strandat 278.944 kb on - strandat 278.944 kb on - strandat 278.980 kb on - strandat 279.011 kb on - strandat 279.055 kb on + strandat 279.067 kb on - strandat 279.100 kb on - strandat 279.181 kb on - strandat 279.237 kb on + strandat 279.297 kb on - strand, within Echvi_0275at 279.328 kb on - strand, within Echvi_0275at 279.613 kb on - strand, within Echvi_0275at 279.648 kb on - strand, within Echvi_0275at 279.698 kb on - strandat 279.712 kb on - strandat 279.752 kb on + strandat 279.785 kb on + strandat 280.512 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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278,210 + Echvi_0274 0.63 +0.1
278,210 + Echvi_0274 0.63 -2.5
278,211 - Echvi_0274 0.63 -0.7
278,318 + Echvi_0274 0.67 -1.6
278,319 - Echvi_0274 0.67 +1.6
278,319 - Echvi_0274 0.67 -0.7
278,322 - Echvi_0274 0.68 -0.4
278,322 - Echvi_0274 0.68 +1.1
278,590 + Echvi_0274 0.78 -1.8
278,633 + Echvi_0274 0.80 +1.9
278,676 + Echvi_0274 0.81 +0.5
278,677 - Echvi_0274 0.81 -1.1
278,721 + Echvi_0274 0.83 +1.7
278,739 + Echvi_0274 0.84 +1.3
278,740 - Echvi_0274 0.84 -0.8
278,759 - Echvi_0274 0.85 -1.1
278,775 - Echvi_0274 0.85 +0.2
278,778 + Echvi_0274 0.85 -0.8
278,944 - +1.1
278,944 - +0.5
278,944 - -1.6
278,944 - -0.9
278,980 - +0.5
279,011 - +0.4
279,055 + -1.8
279,067 - +0.1
279,100 - +0.5
279,181 - +0.1
279,237 + -0.6
279,297 - Echvi_0275 0.19 -1.2
279,328 - Echvi_0275 0.25 -0.9
279,613 - Echvi_0275 0.82 -0.8
279,648 - Echvi_0275 0.89 +0.1
279,698 - +0.2
279,712 - -0.1
279,752 + -1.2
279,785 + +0.5
280,512 + -0.6

Or see this region's nucleotide sequence