Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0120

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0119 and Echvi_0120 are separated by 546 nucleotidesEchvi_0120 and Echvi_0121 are separated by 25 nucleotides Echvi_0119: Echvi_0119 - Proline dehydrogenase (EC 1.5.5.2) (from data), at 118,205 to 119,401 _0119 Echvi_0120: Echvi_0120 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) (from data), at 119,948 to 121,051 _0120 Echvi_0121: Echvi_0121 - 3-dehydroquinate synthase, at 121,077 to 122,114 _0121 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 118.984 kb on - strand, within Echvi_0119at 119.006 kb on - strand, within Echvi_0119at 119.006 kb on - strand, within Echvi_0119at 119.058 kb on - strand, within Echvi_0119at 119.083 kb on - strand, within Echvi_0119at 119.208 kb on - strand, within Echvi_0119at 119.238 kb on - strand, within Echvi_0119at 119.249 kb on - strand, within Echvi_0119at 119.320 kb on - strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.519 kb on + strandat 119.528 kb on + strandat 119.528 kb on + strandat 119.528 kb on + strandat 119.529 kb on - strandat 119.529 kb on - strandat 119.530 kb on + strandat 119.530 kb on + strandat 119.530 kb on + strandat 119.531 kb on - strandat 119.569 kb on + strandat 119.570 kb on - strandat 119.613 kb on + strandat 119.613 kb on + strandat 119.696 kb on + strandat 119.738 kb on - strandat 119.757 kb on - strandat 119.858 kb on - strandat 120.020 kb on - strandat 120.020 kb on - strandat 120.043 kb on - strandat 120.202 kb on + strand, within Echvi_0120at 120.214 kb on - strand, within Echvi_0120at 120.238 kb on - strand, within Echvi_0120at 120.244 kb on - strand, within Echvi_0120at 120.255 kb on + strand, within Echvi_0120at 120.255 kb on + strand, within Echvi_0120at 120.288 kb on + strand, within Echvi_0120at 120.346 kb on + strand, within Echvi_0120at 120.415 kb on - strand, within Echvi_0120at 120.418 kb on + strand, within Echvi_0120at 120.418 kb on + strand, within Echvi_0120at 120.419 kb on - strand, within Echvi_0120at 120.551 kb on - strand, within Echvi_0120at 120.625 kb on - strand, within Echvi_0120at 120.846 kb on + strand, within Echvi_0120at 120.846 kb on + strand, within Echvi_0120at 120.847 kb on - strand, within Echvi_0120at 120.868 kb on + strand, within Echvi_0120at 120.868 kb on + strand, within Echvi_0120at 120.869 kb on - strand, within Echvi_0120at 120.869 kb on - strand, within Echvi_0120at 120.869 kb on - strand, within Echvi_0120at 120.996 kb on + strandat 121.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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118,984 - Echvi_0119 0.65 -0.4
119,006 - Echvi_0119 0.67 +0.9
119,006 - Echvi_0119 0.67 +0.4
119,058 - Echvi_0119 0.71 -0.5
119,083 - Echvi_0119 0.73 -0.4
119,208 - Echvi_0119 0.84 -0.1
119,238 - Echvi_0119 0.86 -0.9
119,249 - Echvi_0119 0.87 -0.7
119,320 - +0.6
119,500 + +0.6
119,500 + +0.5
119,500 + +0.2
119,500 + +0.3
119,500 + +0.0
119,519 + -0.5
119,528 + -0.1
119,528 + -0.3
119,528 + -0.5
119,529 - -0.3
119,529 - +1.1
119,530 + +0.2
119,530 + +0.8
119,530 + +0.6
119,531 - -0.5
119,569 + +2.9
119,570 - -1.3
119,613 + -0.2
119,613 + +1.1
119,696 + +2.1
119,738 - -0.6
119,757 - -1.5
119,858 - -1.2
120,020 - -2.0
120,020 - -2.5
120,043 - -1.3
120,202 + Echvi_0120 0.23 -3.6
120,214 - Echvi_0120 0.24 -3.2
120,238 - Echvi_0120 0.26 -3.3
120,244 - Echvi_0120 0.27 -2.9
120,255 + Echvi_0120 0.28 -3.9
120,255 + Echvi_0120 0.28 -3.7
120,288 + Echvi_0120 0.31 -4.4
120,346 + Echvi_0120 0.36 -3.1
120,415 - Echvi_0120 0.42 -2.4
120,418 + Echvi_0120 0.43 -3.6
120,418 + Echvi_0120 0.43 -3.4
120,419 - Echvi_0120 0.43 -3.1
120,551 - Echvi_0120 0.55 -0.7
120,625 - Echvi_0120 0.61 -0.5
120,846 + Echvi_0120 0.81 -0.5
120,846 + Echvi_0120 0.81 -0.5
120,847 - Echvi_0120 0.81 -2.1
120,868 + Echvi_0120 0.83 -1.3
120,868 + Echvi_0120 0.83 -1.3
120,869 - Echvi_0120 0.83 -1.6
120,869 - Echvi_0120 0.83 -2.3
120,869 - Echvi_0120 0.83 -3.3
120,996 + -1.5
121,061 - -1.5

Or see this region's nucleotide sequence