Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21585

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21580 and CA264_21585 are separated by 41 nucleotidesCA264_21585 and CA264_21590 are separated by 48 nucleotidesCA264_21590 and CA264_21595 are separated by 75 nucleotides CA264_21580: CA264_21580 - hypothetical protein, at 183,836 to 184,834 _21580 CA264_21585: CA264_21585 - hypothetical protein, at 184,876 to 185,205 _21585 CA264_21590: CA264_21590 - SnoaL-like polyketide cyclase, at 185,254 to 185,643 _21590 CA264_21595: CA264_21595 - copper oxidase, at 185,719 to 188,283 _21595 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1at 183.882 kb on + strandat 183.946 kb on + strand, within CA264_21580at 183.946 kb on + strand, within CA264_21580at 183.946 kb on + strand, within CA264_21580at 183.946 kb on + strand, within CA264_21580at 183.967 kb on + strand, within CA264_21580at 183.968 kb on - strand, within CA264_21580at 184.090 kb on - strand, within CA264_21580at 184.107 kb on + strand, within CA264_21580at 184.136 kb on + strand, within CA264_21580at 184.136 kb on + strand, within CA264_21580at 184.137 kb on - strand, within CA264_21580at 184.262 kb on + strand, within CA264_21580at 184.262 kb on + strand, within CA264_21580at 184.262 kb on + strand, within CA264_21580at 184.262 kb on + strand, within CA264_21580at 184.263 kb on - strand, within CA264_21580at 184.263 kb on - strand, within CA264_21580at 184.263 kb on - strand, within CA264_21580at 184.263 kb on - strand, within CA264_21580at 184.263 kb on - strand, within CA264_21580at 184.280 kb on - strand, within CA264_21580at 184.295 kb on + strand, within CA264_21580at 184.322 kb on + strand, within CA264_21580at 184.322 kb on + strand, within CA264_21580at 184.324 kb on + strand, within CA264_21580at 184.325 kb on - strand, within CA264_21580at 184.386 kb on + strand, within CA264_21580at 184.386 kb on + strand, within CA264_21580at 184.386 kb on + strand, within CA264_21580at 184.386 kb on + strand, within CA264_21580at 184.414 kb on + strand, within CA264_21580at 184.495 kb on + strand, within CA264_21580at 184.495 kb on + strand, within CA264_21580at 184.500 kb on + strand, within CA264_21580at 184.500 kb on + strand, within CA264_21580at 184.500 kb on + strand, within CA264_21580at 184.500 kb on + strand, within CA264_21580at 184.500 kb on + strand, within CA264_21580at 184.501 kb on - strand, within CA264_21580at 184.501 kb on - strand, within CA264_21580at 184.501 kb on - strand, within CA264_21580at 184.501 kb on - strand, within CA264_21580at 184.501 kb on - strand, within CA264_21580at 184.504 kb on + strand, within CA264_21580at 184.504 kb on + strand, within CA264_21580at 184.504 kb on + strand, within CA264_21580at 184.505 kb on - strand, within CA264_21580at 184.509 kb on + strand, within CA264_21580at 184.585 kb on + strand, within CA264_21580at 184.586 kb on - strand, within CA264_21580at 184.712 kb on - strand, within CA264_21580at 184.747 kb on + strandat 184.748 kb on - strandat 184.765 kb on + strandat 184.766 kb on - strandat 184.821 kb on + strandat 184.822 kb on - strandat 184.847 kb on - strandat 184.851 kb on - strandat 184.939 kb on + strand, within CA264_21585at 184.940 kb on - strand, within CA264_21585at 185.035 kb on - strand, within CA264_21585at 185.035 kb on - strand, within CA264_21585at 185.035 kb on - strand, within CA264_21585at 185.037 kb on + strand, within CA264_21585at 185.038 kb on - strand, within CA264_21585at 185.041 kb on + strand, within CA264_21585at 185.042 kb on - strand, within CA264_21585at 185.042 kb on - strand, within CA264_21585at 185.065 kb on - strand, within CA264_21585at 185.092 kb on - strand, within CA264_21585at 185.158 kb on + strand, within CA264_21585at 185.159 kb on - strand, within CA264_21585at 185.162 kb on + strand, within CA264_21585at 185.162 kb on + strand, within CA264_21585at 185.163 kb on - strand, within CA264_21585at 185.183 kb on - strandat 185.206 kb on - strandat 185.216 kb on - strandat 185.235 kb on + strandat 185.260 kb on - strandat 185.316 kb on + strand, within CA264_21590at 185.316 kb on + strand, within CA264_21590at 185.317 kb on - strand, within CA264_21590at 185.318 kb on + strand, within CA264_21590at 185.318 kb on + strand, within CA264_21590at 185.318 kb on + strand, within CA264_21590at 185.319 kb on - strand, within CA264_21590at 185.319 kb on - strand, within CA264_21590at 185.319 kb on - strand, within CA264_21590at 185.360 kb on + strand, within CA264_21590at 185.361 kb on - strand, within CA264_21590at 185.361 kb on - strand, within CA264_21590at 185.361 kb on - strand, within CA264_21590at 185.381 kb on - strand, within CA264_21590at 185.451 kb on - strand, within CA264_21590at 185.454 kb on + strand, within CA264_21590at 185.505 kb on + strand, within CA264_21590at 185.505 kb on + strand, within CA264_21590at 185.506 kb on - strand, within CA264_21590at 185.584 kb on + strand, within CA264_21590at 185.585 kb on - strand, within CA264_21590at 185.623 kb on + strandat 185.624 kb on - strandat 185.624 kb on - strandat 185.649 kb on - strandat 185.649 kb on - strandat 185.649 kb on - strandat 185.765 kb on + strandat 185.837 kb on + strandat 185.838 kb on - strandat 185.838 kb on - strandat 185.838 kb on - strandat 185.851 kb on - strandat 185.928 kb on + strandat 185.928 kb on + strandat 185.928 kb on + strandat 185.928 kb on + strandat 185.983 kb on - strand, within CA264_21595at 186.009 kb on + strand, within CA264_21595at 186.009 kb on + strand, within CA264_21595at 186.009 kb on + strand, within CA264_21595at 186.009 kb on + strand, within CA264_21595at 186.010 kb on - strand, within CA264_21595at 186.010 kb on - strand, within CA264_21595at 186.010 kb on - strand, within CA264_21595at 186.011 kb on + strand, within CA264_21595at 186.011 kb on + strand, within CA264_21595at 186.011 kb on + strand, within CA264_21595at 186.011 kb on + strand, within CA264_21595at 186.027 kb on + strand, within CA264_21595at 186.067 kb on - strand, within CA264_21595at 186.114 kb on - strand, within CA264_21595at 186.129 kb on + strand, within CA264_21595at 186.129 kb on + strand, within CA264_21595at 186.134 kb on + strand, within CA264_21595at 186.138 kb on + strand, within CA264_21595at 186.170 kb on + strand, within CA264_21595at 186.170 kb on + strand, within CA264_21595at 186.171 kb on - strand, within CA264_21595at 186.181 kb on + strand, within CA264_21595at 186.186 kb on + strand, within CA264_21595

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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183,882 + -0.5
183,946 + CA264_21580 0.11 -0.9
183,946 + CA264_21580 0.11 -1.2
183,946 + CA264_21580 0.11 -0.1
183,946 + CA264_21580 0.11 -0.4
183,967 + CA264_21580 0.13 -1.1
183,968 - CA264_21580 0.13 +0.3
184,090 - CA264_21580 0.25 -0.3
184,107 + CA264_21580 0.27 -0.3
184,136 + CA264_21580 0.30 -0.1
184,136 + CA264_21580 0.30 -0.0
184,137 - CA264_21580 0.30 +0.4
184,262 + CA264_21580 0.43 -0.1
184,262 + CA264_21580 0.43 -0.4
184,262 + CA264_21580 0.43 +0.1
184,262 + CA264_21580 0.43 -0.7
184,263 - CA264_21580 0.43 -0.7
184,263 - CA264_21580 0.43 +0.2
184,263 - CA264_21580 0.43 -0.2
184,263 - CA264_21580 0.43 -0.0
184,263 - CA264_21580 0.43 +0.6
184,280 - CA264_21580 0.44 -1.1
184,295 + CA264_21580 0.46 -1.1
184,322 + CA264_21580 0.49 -0.4
184,322 + CA264_21580 0.49 +0.4
184,324 + CA264_21580 0.49 +0.1
184,325 - CA264_21580 0.49 -1.8
184,386 + CA264_21580 0.55 -0.3
184,386 + CA264_21580 0.55 -1.6
184,386 + CA264_21580 0.55 -0.6
184,386 + CA264_21580 0.55 -0.5
184,414 + CA264_21580 0.58 -0.1
184,495 + CA264_21580 0.66 -2.0
184,495 + CA264_21580 0.66 -0.5
184,500 + CA264_21580 0.66 -0.2
184,500 + CA264_21580 0.66 -0.3
184,500 + CA264_21580 0.66 +0.1
184,500 + CA264_21580 0.66 +1.6
184,500 + CA264_21580 0.66 -0.0
184,501 - CA264_21580 0.67 +0.1
184,501 - CA264_21580 0.67 -0.4
184,501 - CA264_21580 0.67 +0.2
184,501 - CA264_21580 0.67 -0.3
184,501 - CA264_21580 0.67 -1.1
184,504 + CA264_21580 0.67 -0.2
184,504 + CA264_21580 0.67 -0.6
184,504 + CA264_21580 0.67 -0.1
184,505 - CA264_21580 0.67 -0.3
184,509 + CA264_21580 0.67 +0.0
184,585 + CA264_21580 0.75 -0.4
184,586 - CA264_21580 0.75 +0.2
184,712 - CA264_21580 0.88 -0.2
184,747 + -0.1
184,748 - -0.5
184,765 + -0.6
184,766 - -0.1
184,821 + +0.5
184,822 - -0.6
184,847 - +0.6
184,851 - +1.2
184,939 + CA264_21585 0.19 -0.0
184,940 - CA264_21585 0.19 +0.1
185,035 - CA264_21585 0.48 -0.3
185,035 - CA264_21585 0.48 +1.7
185,035 - CA264_21585 0.48 +0.4
185,037 + CA264_21585 0.49 +0.4
185,038 - CA264_21585 0.49 +1.2
185,041 + CA264_21585 0.50 -0.2
185,042 - CA264_21585 0.50 -0.3
185,042 - CA264_21585 0.50 -1.4
185,065 - CA264_21585 0.57 -0.1
185,092 - CA264_21585 0.65 +0.5
185,158 + CA264_21585 0.85 +0.0
185,159 - CA264_21585 0.86 -0.0
185,162 + CA264_21585 0.87 -0.5
185,162 + CA264_21585 0.87 -0.1
185,163 - CA264_21585 0.87 +0.0
185,183 - -0.2
185,206 - -1.5
185,216 - +0.4
185,235 + +0.0
185,260 - +0.2
185,316 + CA264_21590 0.16 +0.3
185,316 + CA264_21590 0.16 +0.4
185,317 - CA264_21590 0.16 -0.1
185,318 + CA264_21590 0.16 -2.1
185,318 + CA264_21590 0.16 -0.5
185,318 + CA264_21590 0.16 +0.4
185,319 - CA264_21590 0.17 -0.2
185,319 - CA264_21590 0.17 -0.3
185,319 - CA264_21590 0.17 +0.7
185,360 + CA264_21590 0.27 -0.3
185,361 - CA264_21590 0.27 +0.3
185,361 - CA264_21590 0.27 -0.1
185,361 - CA264_21590 0.27 -0.6
185,381 - CA264_21590 0.33 +0.2
185,451 - CA264_21590 0.51 +0.7
185,454 + CA264_21590 0.51 -0.1
185,505 + CA264_21590 0.64 +0.2
185,505 + CA264_21590 0.64 +0.2
185,506 - CA264_21590 0.65 +0.0
185,584 + CA264_21590 0.85 -0.7
185,585 - CA264_21590 0.85 +0.2
185,623 + +1.4
185,624 - -0.3
185,624 - -0.3
185,649 - +0.7
185,649 - +0.1
185,649 - -0.3
185,765 + +0.7
185,837 + +0.7
185,838 - +0.1
185,838 - -0.3
185,838 - -0.8
185,851 - -0.2
185,928 + -0.9
185,928 + -0.5
185,928 + -0.9
185,928 + +0.7
185,983 - CA264_21595 0.10 -0.5
186,009 + CA264_21595 0.11 +0.4
186,009 + CA264_21595 0.11 -0.8
186,009 + CA264_21595 0.11 -0.8
186,009 + CA264_21595 0.11 -0.1
186,010 - CA264_21595 0.11 +0.4
186,010 - CA264_21595 0.11 +0.3
186,010 - CA264_21595 0.11 -0.3
186,011 + CA264_21595 0.11 -1.1
186,011 + CA264_21595 0.11 -0.7
186,011 + CA264_21595 0.11 -0.5
186,011 + CA264_21595 0.11 +0.3
186,027 + CA264_21595 0.12 -0.6
186,067 - CA264_21595 0.14 -0.8
186,114 - CA264_21595 0.15 -0.5
186,129 + CA264_21595 0.16 -0.4
186,129 + CA264_21595 0.16 +0.3
186,134 + CA264_21595 0.16 +0.2
186,138 + CA264_21595 0.16 -0.1
186,170 + CA264_21595 0.18 -1.0
186,170 + CA264_21595 0.18 +0.4
186,171 - CA264_21595 0.18 -0.8
186,181 + CA264_21595 0.18 +0.8
186,186 + CA264_21595 0.18 -1.1

Or see this region's nucleotide sequence