Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21010

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21005 and CA264_21010 are separated by 17 nucleotidesCA264_21010 and CA264_21015 are separated by 85 nucleotidesCA264_21015 and CA264_21020 overlap by 14 nucleotides CA264_21005: CA264_21005 - plasmid transfer protein, at 63,205 to 64,200 _21005 CA264_21010: CA264_21010 - conjugative transposon protein TraK, at 64,218 to 64,826 _21010 CA264_21015: CA264_21015 - hypothetical protein, at 64,912 to 65,190 _21015 CA264_21020: CA264_21020 - conjugative transposon protein TraM, at 65,177 to 66,355 _21020 Position (kb) 64 65Strain fitness (log2 ratio) -1 0 1 2at 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.223 kb on - strandat 63.263 kb on + strandat 63.263 kb on + strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.329 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.439 kb on - strand, within CA264_21005at 63.493 kb on + strand, within CA264_21005at 63.494 kb on - strand, within CA264_21005at 63.506 kb on + strand, within CA264_21005at 63.680 kb on - strand, within CA264_21005at 63.682 kb on + strand, within CA264_21005at 63.728 kb on + strand, within CA264_21005at 63.728 kb on + strand, within CA264_21005at 63.766 kb on + strand, within CA264_21005at 63.766 kb on + strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.772 kb on - strand, within CA264_21005at 63.772 kb on - strand, within CA264_21005at 63.775 kb on + strand, within CA264_21005at 63.837 kb on + strand, within CA264_21005at 63.920 kb on - strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.955 kb on + strand, within CA264_21005at 63.975 kb on - strand, within CA264_21005at 64.015 kb on - strand, within CA264_21005at 64.015 kb on - strand, within CA264_21005at 64.054 kb on + strand, within CA264_21005at 64.140 kb on + strandat 64.140 kb on + strandat 64.141 kb on - strandat 64.218 kb on - strandat 64.222 kb on + strandat 64.226 kb on + strandat 64.265 kb on + strandat 64.277 kb on + strandat 64.278 kb on - strandat 64.278 kb on - strandat 64.292 kb on + strand, within CA264_21010at 64.297 kb on + strand, within CA264_21010at 64.298 kb on - strand, within CA264_21010at 64.423 kb on - strand, within CA264_21010at 64.440 kb on - strand, within CA264_21010at 64.440 kb on - strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.483 kb on - strand, within CA264_21010at 64.483 kb on - strand, within CA264_21010at 64.493 kb on + strand, within CA264_21010at 64.569 kb on + strand, within CA264_21010at 64.569 kb on + strand, within CA264_21010at 64.647 kb on - strand, within CA264_21010at 64.653 kb on + strand, within CA264_21010at 64.766 kb on - strandat 64.803 kb on + strandat 64.831 kb on - strandat 64.876 kb on + strandat 64.877 kb on - strandat 64.923 kb on - strandat 64.946 kb on + strand, within CA264_21015at 64.946 kb on + strand, within CA264_21015at 64.978 kb on + strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 65.016 kb on + strand, within CA264_21015at 65.061 kb on + strand, within CA264_21015at 65.061 kb on + strand, within CA264_21015at 65.062 kb on - strand, within CA264_21015at 65.083 kb on + strand, within CA264_21015at 65.083 kb on + strand, within CA264_21015at 65.084 kb on - strand, within CA264_21015at 65.148 kb on + strand, within CA264_21015at 65.226 kb on + strandat 65.227 kb on - strandat 65.252 kb on + strandat 65.252 kb on + strandat 65.253 kb on - strandat 65.253 kb on - strandat 65.253 kb on - strandat 65.253 kb on - strandat 65.329 kb on + strand, within CA264_21020at 65.330 kb on - strand, within CA264_21020at 65.330 kb on - strand, within CA264_21020at 65.374 kb on + strand, within CA264_21020at 65.402 kb on - strand, within CA264_21020at 65.407 kb on + strand, within CA264_21020at 65.417 kb on + strand, within CA264_21020at 65.417 kb on + strand, within CA264_21020at 65.557 kb on + strand, within CA264_21020at 65.601 kb on - strand, within CA264_21020at 65.666 kb on + strand, within CA264_21020at 65.667 kb on - strand, within CA264_21020

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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63,222 + -1.3
63,222 + -0.2
63,222 + +0.1
63,222 + +0.0
63,223 - -0.1
63,263 + +0.1
63,263 + +1.4
63,264 - -0.5
63,264 - +0.3
63,264 - +0.3
63,329 - CA264_21005 0.12 +2.4
63,347 - CA264_21005 0.14 -0.1
63,347 - CA264_21005 0.14 +1.9
63,439 - CA264_21005 0.23 -0.5
63,493 + CA264_21005 0.29 -0.1
63,494 - CA264_21005 0.29 +0.5
63,506 + CA264_21005 0.30 +1.1
63,680 - CA264_21005 0.48 +1.5
63,682 + CA264_21005 0.48 +0.4
63,728 + CA264_21005 0.53 +0.6
63,728 + CA264_21005 0.53 +0.4
63,766 + CA264_21005 0.56 -0.0
63,766 + CA264_21005 0.56 +0.1
63,767 - CA264_21005 0.56 +0.0
63,767 - CA264_21005 0.56 -0.1
63,767 - CA264_21005 0.56 -1.5
63,772 - CA264_21005 0.57 +0.1
63,772 - CA264_21005 0.57 -0.6
63,775 + CA264_21005 0.57 +0.3
63,837 + CA264_21005 0.63 -0.5
63,920 - CA264_21005 0.72 +1.2
63,927 + CA264_21005 0.72 -1.3
63,927 + CA264_21005 0.72 -0.9
63,927 + CA264_21005 0.72 +0.3
63,928 - CA264_21005 0.73 -0.4
63,928 - CA264_21005 0.73 +0.2
63,928 - CA264_21005 0.73 +0.2
63,928 - CA264_21005 0.73 +0.3
63,955 + CA264_21005 0.75 +0.0
63,975 - CA264_21005 0.77 +0.2
64,015 - CA264_21005 0.81 -0.3
64,015 - CA264_21005 0.81 -0.0
64,054 + CA264_21005 0.85 +0.4
64,140 + -0.1
64,140 + +0.4
64,141 - -0.5
64,218 - +0.1
64,222 + -0.9
64,226 + -0.3
64,265 + +0.4
64,277 + +0.1
64,278 - +0.4
64,278 - -0.6
64,292 + CA264_21010 0.12 -0.2
64,297 + CA264_21010 0.13 -0.6
64,298 - CA264_21010 0.13 +0.5
64,423 - CA264_21010 0.34 -0.5
64,440 - CA264_21010 0.36 +0.8
64,440 - CA264_21010 0.36 -0.4
64,482 + CA264_21010 0.43 +0.4
64,482 + CA264_21010 0.43 -0.4
64,482 + CA264_21010 0.43 -0.6
64,483 - CA264_21010 0.44 +0.2
64,483 - CA264_21010 0.44 +1.3
64,493 + CA264_21010 0.45 -0.5
64,569 + CA264_21010 0.58 -0.4
64,569 + CA264_21010 0.58 -0.4
64,647 - CA264_21010 0.70 -0.6
64,653 + CA264_21010 0.71 -0.4
64,766 - -0.1
64,803 + -1.4
64,831 - -0.0
64,876 + -0.3
64,877 - -0.3
64,923 - -0.1
64,946 + CA264_21015 0.12 +0.3
64,946 + CA264_21015 0.12 -0.1
64,978 + CA264_21015 0.24 -0.9
64,979 - CA264_21015 0.24 +0.1
64,979 - CA264_21015 0.24 +0.7
64,979 - CA264_21015 0.24 +0.4
65,016 + CA264_21015 0.37 +0.7
65,061 + CA264_21015 0.53 +0.2
65,061 + CA264_21015 0.53 -0.4
65,062 - CA264_21015 0.54 +2.0
65,083 + CA264_21015 0.61 +0.2
65,083 + CA264_21015 0.61 +0.0
65,084 - CA264_21015 0.62 +0.6
65,148 + CA264_21015 0.85 -0.3
65,226 + +0.1
65,227 - -0.4
65,252 + -0.2
65,252 + -0.3
65,253 - -0.4
65,253 - +0.3
65,253 - -0.1
65,253 - +2.4
65,329 + CA264_21020 0.13 +0.9
65,330 - CA264_21020 0.13 -1.1
65,330 - CA264_21020 0.13 -0.4
65,374 + CA264_21020 0.17 -0.8
65,402 - CA264_21020 0.19 -0.1
65,407 + CA264_21020 0.20 +0.6
65,417 + CA264_21020 0.20 +0.7
65,417 + CA264_21020 0.20 +0.3
65,557 + CA264_21020 0.32 +0.3
65,601 - CA264_21020 0.36 -1.2
65,666 + CA264_21020 0.41 +0.2
65,667 - CA264_21020 0.42 -0.1

Or see this region's nucleotide sequence