Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20755 and CA264_20760 are separated by 240 nucleotides CA264_20760 and CA264_20765 overlap by 13 nucleotides CA264_20765 and CA264_20770 are separated by 3 nucleotides
CA264_20755: CA264_20755 - hypothetical protein, at 11,268 to 12,029
_20755
CA264_20760: CA264_20760 - hypothetical protein, at 12,270 to 13,040
_20760
CA264_20765: CA264_20765 - hypothetical protein, at 13,028 to 13,789
_20765
CA264_20770: CA264_20770 - oxidoreductase, at 13,793 to 15,757
_20770
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.115 kb on + strand at 12.120 kb on - strand at 12.120 kb on - strand at 12.146 kb on - strand at 12.181 kb on + strand at 12.184 kb on - strand at 12.186 kb on + strand at 12.187 kb on - strand at 12.255 kb on + strand at 12.256 kb on - strand at 12.317 kb on + strand at 12.318 kb on - strand at 12.334 kb on + strand at 12.334 kb on + strand at 12.348 kb on + strand, within CA264_20760 at 12.348 kb on + strand, within CA264_20760 at 12.606 kb on - strand, within CA264_20760 at 12.612 kb on + strand, within CA264_20760 at 12.634 kb on - strand, within CA264_20760 at 12.729 kb on + strand, within CA264_20760 at 12.729 kb on + strand, within CA264_20760 at 12.729 kb on + strand, within CA264_20760 at 12.730 kb on - strand, within CA264_20760 at 12.749 kb on + strand, within CA264_20760 at 12.876 kb on - strand, within CA264_20760 at 12.931 kb on - strand, within CA264_20760 at 12.931 kb on - strand, within CA264_20760 at 12.953 kb on + strand, within CA264_20760 at 12.954 kb on - strand, within CA264_20760 at 12.954 kb on - strand, within CA264_20760 at 12.956 kb on + strand, within CA264_20760 at 12.957 kb on - strand, within CA264_20760 at 12.957 kb on - strand, within CA264_20760 at 12.972 kb on - strand at 12.972 kb on - strand at 12.975 kb on - strand at 12.978 kb on + strand at 13.012 kb on - strand at 13.012 kb on - strand at 13.012 kb on - strand at 13.012 kb on - strand at 13.016 kb on + strand at 13.111 kb on + strand, within CA264_20765 at 13.119 kb on + strand, within CA264_20765 at 13.170 kb on + strand, within CA264_20765 at 13.202 kb on + strand, within CA264_20765 at 13.203 kb on - strand, within CA264_20765 at 13.264 kb on + strand, within CA264_20765 at 13.267 kb on + strand, within CA264_20765 at 13.267 kb on + strand, within CA264_20765 at 13.267 kb on + strand, within CA264_20765 at 13.268 kb on - strand, within CA264_20765 at 13.302 kb on + strand, within CA264_20765 at 13.302 kb on + strand, within CA264_20765 at 13.303 kb on - strand, within CA264_20765 at 13.354 kb on - strand, within CA264_20765 at 13.354 kb on - strand, within CA264_20765 at 13.354 kb on - strand, within CA264_20765 at 13.411 kb on - strand, within CA264_20765 at 13.422 kb on + strand, within CA264_20765 at 13.423 kb on - strand, within CA264_20765 at 13.446 kb on - strand, within CA264_20765 at 13.450 kb on + strand, within CA264_20765 at 13.523 kb on + strand, within CA264_20765 at 13.523 kb on + strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.524 kb on - strand, within CA264_20765 at 13.525 kb on + strand, within CA264_20765 at 13.526 kb on - strand, within CA264_20765 at 13.543 kb on + strand, within CA264_20765 at 13.545 kb on + strand, within CA264_20765 at 13.545 kb on + strand, within CA264_20765 at 13.546 kb on - strand, within CA264_20765 at 13.546 kb on - strand, within CA264_20765 at 13.546 kb on - strand, within CA264_20765 at 13.560 kb on - strand, within CA264_20765 at 13.742 kb on - strand at 13.768 kb on + strand at 13.790 kb on - strand at 13.790 kb on - strand at 13.883 kb on + strand at 13.884 kb on - strand at 13.884 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.928 kb on - strand at 13.953 kb on + strand at 13.954 kb on - strand at 13.960 kb on + strand at 13.961 kb on - strand at 13.964 kb on + strand at 13.964 kb on + strand at 13.965 kb on - strand at 14.010 kb on - strand, within CA264_20770 at 14.041 kb on + strand, within CA264_20770 at 14.271 kb on - strand, within CA264_20770 at 14.273 kb on + strand, within CA264_20770 at 14.274 kb on - strand, within CA264_20770 at 14.274 kb on - strand, within CA264_20770 at 14.400 kb on + strand, within CA264_20770 at 14.401 kb on - strand, within CA264_20770 at 14.401 kb on - strand, within CA264_20770 at 14.405 kb on + strand, within CA264_20770 at 14.405 kb on + strand, within CA264_20770 at 14.425 kb on + strand, within CA264_20770 at 14.441 kb on - strand, within CA264_20770 at 14.447 kb on - strand, within CA264_20770 at 14.447 kb on - strand, within CA264_20770 at 14.612 kb on + strand, within CA264_20770 at 14.614 kb on + strand, within CA264_20770 at 14.615 kb on - strand, within CA264_20770 at 14.634 kb on + strand, within CA264_20770 at 14.683 kb on - strand, within CA264_20770 at 14.713 kb on + strand, within CA264_20770 at 14.714 kb on - strand, within CA264_20770 at 14.715 kb on + strand, within CA264_20770 at 14.716 kb on - strand, within CA264_20770 at 14.725 kb on + strand, within CA264_20770 at 14.759 kb on - strand, within CA264_20770
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 12,115 + +0.3 12,120 - -1.6 12,120 - -0.5 12,146 - -0.0 12,181 + +1.6 12,184 - -0.3 12,186 + -0.5 12,187 - +1.4 12,255 + -0.2 12,256 - +0.7 12,317 + -0.1 12,318 - +0.3 12,334 + -0.0 12,334 + -0.4 12,348 + CA264_20760 0.10 -0.7 12,348 + CA264_20760 0.10 -0.2 12,606 - CA264_20760 0.44 +1.2 12,612 + CA264_20760 0.44 -0.6 12,634 - CA264_20760 0.47 +0.3 12,729 + CA264_20760 0.60 +0.0 12,729 + CA264_20760 0.60 -0.1 12,729 + CA264_20760 0.60 +0.5 12,730 - CA264_20760 0.60 +0.1 12,749 + CA264_20760 0.62 +0.7 12,876 - CA264_20760 0.79 -0.4 12,931 - CA264_20760 0.86 -0.1 12,931 - CA264_20760 0.86 +0.4 12,953 + CA264_20760 0.89 -0.3 12,954 - CA264_20760 0.89 -0.1 12,954 - CA264_20760 0.89 +0.2 12,956 + CA264_20760 0.89 -0.9 12,957 - CA264_20760 0.89 -0.3 12,957 - CA264_20760 0.89 +0.9 12,972 - -0.1 12,972 - -0.1 12,975 - -0.1 12,978 + -0.5 13,012 - -0.4 13,012 - +0.1 13,012 - +0.7 13,012 - +0.2 13,016 + +0.6 13,111 + CA264_20765 0.11 -0.4 13,119 + CA264_20765 0.12 -0.3 13,170 + CA264_20765 0.19 +0.7 13,202 + CA264_20765 0.23 +0.6 13,203 - CA264_20765 0.23 +0.3 13,264 + CA264_20765 0.31 -0.7 13,267 + CA264_20765 0.31 +0.1 13,267 + CA264_20765 0.31 -0.6 13,267 + CA264_20765 0.31 -0.7 13,268 - CA264_20765 0.31 +0.0 13,302 + CA264_20765 0.36 -0.5 13,302 + CA264_20765 0.36 -1.7 13,303 - CA264_20765 0.36 +0.0 13,354 - CA264_20765 0.43 +0.0 13,354 - CA264_20765 0.43 -0.1 13,354 - CA264_20765 0.43 +0.2 13,411 - CA264_20765 0.50 +0.6 13,422 + CA264_20765 0.52 +0.2 13,423 - CA264_20765 0.52 -0.1 13,446 - CA264_20765 0.55 -0.1 13,450 + CA264_20765 0.55 +0.7 13,523 + CA264_20765 0.65 -0.1 13,523 + CA264_20765 0.65 -0.6 13,524 - CA264_20765 0.65 -0.2 13,524 - CA264_20765 0.65 +0.3 13,524 - CA264_20765 0.65 +2.5 13,524 - CA264_20765 0.65 -0.7 13,524 - CA264_20765 0.65 -2.2 13,524 - CA264_20765 0.65 +0.3 13,525 + CA264_20765 0.65 -0.0 13,526 - CA264_20765 0.65 +1.1 13,543 + CA264_20765 0.68 -0.0 13,545 + CA264_20765 0.68 -2.3 13,545 + CA264_20765 0.68 -0.4 13,546 - CA264_20765 0.68 +0.1 13,546 - CA264_20765 0.68 +0.6 13,546 - CA264_20765 0.68 -0.2 13,560 - CA264_20765 0.70 -0.1 13,742 - -0.2 13,768 + -0.4 13,790 - +1.4 13,790 - -0.5 13,883 + +0.3 13,884 - +0.4 13,884 - +0.5 13,896 - +0.0 13,896 - -0.9 13,896 - +0.2 13,928 - -0.6 13,953 + -0.1 13,954 - +0.7 13,960 + +0.3 13,961 - -1.1 13,964 + +0.3 13,964 + -0.5 13,965 - +1.8 14,010 - CA264_20770 0.11 +0.3 14,041 + CA264_20770 0.13 -0.4 14,271 - CA264_20770 0.24 -0.3 14,273 + CA264_20770 0.24 -0.3 14,274 - CA264_20770 0.24 -0.1 14,274 - CA264_20770 0.24 +0.0 14,400 + CA264_20770 0.31 +0.1 14,401 - CA264_20770 0.31 +0.4 14,401 - CA264_20770 0.31 +0.2 14,405 + CA264_20770 0.31 -0.5 14,405 + CA264_20770 0.31 -0.5 14,425 + CA264_20770 0.32 -0.6 14,441 - CA264_20770 0.33 -0.8 14,447 - CA264_20770 0.33 +0.5 14,447 - CA264_20770 0.33 -0.4 14,612 + CA264_20770 0.42 -0.3 14,614 + CA264_20770 0.42 +0.3 14,615 - CA264_20770 0.42 -0.0 14,634 + CA264_20770 0.43 -0.1 14,683 - CA264_20770 0.45 +0.4 14,713 + CA264_20770 0.47 -0.1 14,714 - CA264_20770 0.47 -0.5 14,715 + CA264_20770 0.47 +0.1 14,716 - CA264_20770 0.47 -2.0 14,725 + CA264_20770 0.47 -0.4 14,759 - CA264_20770 0.49 -0.6
Or see this region's nucleotide sequence