Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13555 and CA264_13560 are separated by 177 nucleotides CA264_13560 and CA264_13565 are separated by 157 nucleotides CA264_13565 and CA264_13570 are separated by 307 nucleotides
CA264_13555: CA264_13555 - hypothetical protein, at 3,164,820 to 3,165,110
_13555
CA264_13560: CA264_13560 - membrane protein insertion efficiency factor YidD, at 3,165,288 to 3,165,509
_13560
CA264_13565: CA264_13565 - serine protease, at 3,165,667 to 3,167,916
_13565
CA264_13570: CA264_13570 - beta-N-acetylhexosaminidase, at 3,168,224 to 3,170,557
_13570
Position (kb)
3165
3166
3167
3168 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3164.724 kb on - strand at 3164.727 kb on + strand at 3164.822 kb on - strand at 3164.823 kb on + strand at 3164.944 kb on + strand, within CA264_13555 at 3164.948 kb on + strand, within CA264_13555 at 3164.948 kb on + strand, within CA264_13555 at 3164.956 kb on + strand, within CA264_13555 at 3165.024 kb on + strand, within CA264_13555 at 3165.024 kb on + strand, within CA264_13555 at 3165.105 kb on + strand at 3165.124 kb on + strand at 3165.155 kb on - strand at 3165.164 kb on - strand at 3165.168 kb on - strand at 3165.191 kb on + strand at 3165.191 kb on + strand at 3165.192 kb on - strand at 3165.197 kb on - strand at 3165.204 kb on - strand at 3165.217 kb on - strand at 3165.289 kb on + strand at 3165.289 kb on + strand at 3165.290 kb on - strand at 3165.377 kb on - strand, within CA264_13560 at 3165.400 kb on + strand, within CA264_13560 at 3165.548 kb on - strand at 3165.570 kb on + strand at 3165.575 kb on - strand at 3165.666 kb on + strand at 3165.701 kb on - strand at 3165.804 kb on + strand at 3165.805 kb on - strand at 3166.001 kb on + strand, within CA264_13565 at 3166.002 kb on - strand, within CA264_13565 at 3166.102 kb on + strand, within CA264_13565 at 3166.102 kb on + strand, within CA264_13565 at 3166.103 kb on - strand, within CA264_13565 at 3166.103 kb on - strand, within CA264_13565 at 3166.103 kb on - strand, within CA264_13565 at 3166.111 kb on + strand, within CA264_13565 at 3166.176 kb on - strand, within CA264_13565 at 3166.184 kb on + strand, within CA264_13565 at 3166.184 kb on + strand, within CA264_13565 at 3166.266 kb on + strand, within CA264_13565 at 3166.267 kb on - strand, within CA264_13565 at 3166.267 kb on - strand, within CA264_13565 at 3166.267 kb on - strand, within CA264_13565 at 3166.277 kb on + strand, within CA264_13565 at 3166.279 kb on + strand, within CA264_13565 at 3166.280 kb on - strand, within CA264_13565 at 3166.280 kb on - strand, within CA264_13565 at 3166.280 kb on - strand, within CA264_13565 at 3166.325 kb on + strand, within CA264_13565 at 3166.330 kb on + strand, within CA264_13565 at 3166.330 kb on + strand, within CA264_13565 at 3166.330 kb on + strand at 3166.331 kb on - strand, within CA264_13565 at 3166.545 kb on + strand, within CA264_13565 at 3166.549 kb on + strand, within CA264_13565 at 3166.549 kb on + strand, within CA264_13565 at 3166.549 kb on + strand, within CA264_13565 at 3166.550 kb on - strand, within CA264_13565 at 3166.557 kb on + strand, within CA264_13565 at 3166.558 kb on - strand, within CA264_13565 at 3166.558 kb on - strand, within CA264_13565 at 3166.561 kb on + strand, within CA264_13565 at 3166.561 kb on + strand, within CA264_13565 at 3166.562 kb on - strand, within CA264_13565 at 3166.562 kb on - strand, within CA264_13565 at 3166.569 kb on + strand, within CA264_13565 at 3166.576 kb on - strand, within CA264_13565 at 3166.579 kb on + strand, within CA264_13565 at 3166.580 kb on - strand, within CA264_13565 at 3166.582 kb on + strand, within CA264_13565 at 3166.582 kb on + strand, within CA264_13565 at 3166.583 kb on - strand, within CA264_13565 at 3166.583 kb on - strand, within CA264_13565 at 3166.657 kb on - strand, within CA264_13565 at 3166.713 kb on - strand, within CA264_13565 at 3166.715 kb on + strand, within CA264_13565 at 3166.753 kb on + strand, within CA264_13565 at 3166.754 kb on - strand, within CA264_13565 at 3166.754 kb on - strand, within CA264_13565 at 3166.755 kb on + strand, within CA264_13565 at 3166.756 kb on - strand, within CA264_13565 at 3166.834 kb on + strand, within CA264_13565 at 3166.921 kb on + strand, within CA264_13565 at 3166.921 kb on + strand, within CA264_13565 at 3166.921 kb on + strand, within CA264_13565 at 3166.925 kb on - strand, within CA264_13565 at 3166.966 kb on + strand, within CA264_13565 at 3166.966 kb on + strand, within CA264_13565 at 3166.970 kb on - strand, within CA264_13565 at 3166.973 kb on - strand, within CA264_13565 at 3167.029 kb on + strand, within CA264_13565 at 3167.032 kb on - strand, within CA264_13565 at 3167.065 kb on + strand, within CA264_13565 at 3167.065 kb on + strand, within CA264_13565 at 3167.084 kb on + strand, within CA264_13565 at 3167.085 kb on - strand, within CA264_13565 at 3167.169 kb on + strand, within CA264_13565 at 3167.203 kb on - strand, within CA264_13565 at 3167.248 kb on + strand, within CA264_13565 at 3167.249 kb on - strand, within CA264_13565 at 3167.285 kb on + strand, within CA264_13565 at 3167.285 kb on + strand, within CA264_13565 at 3167.285 kb on + strand, within CA264_13565 at 3167.286 kb on - strand, within CA264_13565 at 3167.286 kb on - strand, within CA264_13565 at 3167.287 kb on + strand, within CA264_13565 at 3167.287 kb on + strand, within CA264_13565 at 3167.287 kb on + strand, within CA264_13565 at 3167.288 kb on - strand, within CA264_13565 at 3167.301 kb on + strand, within CA264_13565 at 3167.302 kb on - strand, within CA264_13565 at 3167.307 kb on + strand, within CA264_13565 at 3167.307 kb on + strand, within CA264_13565 at 3167.308 kb on - strand, within CA264_13565 at 3167.341 kb on + strand, within CA264_13565 at 3167.341 kb on + strand, within CA264_13565 at 3167.341 kb on + strand, within CA264_13565 at 3167.342 kb on - strand, within CA264_13565 at 3167.343 kb on + strand, within CA264_13565 at 3167.343 kb on + strand, within CA264_13565 at 3167.366 kb on - strand, within CA264_13565 at 3167.371 kb on + strand, within CA264_13565 at 3167.375 kb on - strand, within CA264_13565 at 3167.456 kb on - strand, within CA264_13565 at 3167.456 kb on - strand, within CA264_13565 at 3167.490 kb on + strand, within CA264_13565 at 3167.490 kb on + strand, within CA264_13565 at 3167.695 kb on - strand at 3167.738 kb on + strand at 3167.739 kb on - strand at 3168.016 kb on - strand at 3168.164 kb on + strand at 3168.165 kb on - strand at 3168.184 kb on - strand at 3168.243 kb on + strand at 3168.243 kb on + strand at 3168.243 kb on + strand at 3168.250 kb on - strand at 3168.273 kb on + strand at 3168.274 kb on - strand at 3168.284 kb on + strand at 3168.285 kb on - strand at 3168.444 kb on + strand at 3168.462 kb on + strand, within CA264_13570 at 3168.462 kb on + strand, within CA264_13570 at 3168.561 kb on - strand, within CA264_13570 at 3168.561 kb on - strand, within CA264_13570 at 3168.562 kb on + strand, within CA264_13570 at 3168.698 kb on - strand, within CA264_13570
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 3,164,724 - +1.2 3,164,727 + +0.3 3,164,822 - -0.8 3,164,823 + +1.4 3,164,944 + CA264_13555 0.43 +0.4 3,164,948 + CA264_13555 0.44 -1.5 3,164,948 + CA264_13555 0.44 -0.5 3,164,956 + CA264_13555 0.47 -0.4 3,165,024 + CA264_13555 0.70 -0.5 3,165,024 + CA264_13555 0.70 -0.3 3,165,105 + -0.6 3,165,124 + +0.2 3,165,155 - -0.5 3,165,164 - +0.3 3,165,168 - +0.5 3,165,191 + -2.1 3,165,191 + +1.1 3,165,192 - +2.8 3,165,197 - +0.1 3,165,204 - -0.5 3,165,217 - +0.5 3,165,289 + +0.4 3,165,289 + +0.1 3,165,290 - +0.1 3,165,377 - CA264_13560 0.40 +1.6 3,165,400 + CA264_13560 0.50 -0.0 3,165,548 - -0.4 3,165,570 + -2.0 3,165,575 - -0.2 3,165,666 + -0.7 3,165,701 - -1.2 3,165,804 + +0.4 3,165,805 - -0.2 3,166,001 + CA264_13565 0.15 -0.2 3,166,002 - CA264_13565 0.15 +0.3 3,166,102 + CA264_13565 0.19 +0.3 3,166,102 + CA264_13565 0.19 +1.2 3,166,103 - CA264_13565 0.19 -0.4 3,166,103 - CA264_13565 0.19 +0.3 3,166,103 - CA264_13565 0.19 +0.8 3,166,111 + CA264_13565 0.20 +0.7 3,166,176 - CA264_13565 0.23 -1.9 3,166,184 + CA264_13565 0.23 -0.1 3,166,184 + CA264_13565 0.23 -0.0 3,166,266 + CA264_13565 0.27 -1.6 3,166,267 - CA264_13565 0.27 -1.0 3,166,267 - CA264_13565 0.27 -0.6 3,166,267 - CA264_13565 0.27 -0.6 3,166,277 + CA264_13565 0.27 -0.5 3,166,279 + CA264_13565 0.27 +0.0 3,166,280 - CA264_13565 0.27 +0.1 3,166,280 - CA264_13565 0.27 -0.4 3,166,280 - CA264_13565 0.27 +0.1 3,166,325 + CA264_13565 0.29 -0.8 3,166,330 + CA264_13565 0.29 -0.1 3,166,330 + CA264_13565 0.29 -0.7 3,166,330 + +0.5 3,166,331 - CA264_13565 0.30 -0.7 3,166,545 + CA264_13565 0.39 -0.4 3,166,549 + CA264_13565 0.39 +0.4 3,166,549 + CA264_13565 0.39 -0.4 3,166,549 + CA264_13565 0.39 +0.5 3,166,550 - CA264_13565 0.39 +0.0 3,166,557 + CA264_13565 0.40 -0.2 3,166,558 - CA264_13565 0.40 -0.3 3,166,558 - CA264_13565 0.40 -0.2 3,166,561 + CA264_13565 0.40 -0.4 3,166,561 + CA264_13565 0.40 +0.8 3,166,562 - CA264_13565 0.40 -0.5 3,166,562 - CA264_13565 0.40 +0.1 3,166,569 + CA264_13565 0.40 -0.6 3,166,576 - CA264_13565 0.40 +0.0 3,166,579 + CA264_13565 0.41 -0.3 3,166,580 - CA264_13565 0.41 -0.2 3,166,582 + CA264_13565 0.41 -0.4 3,166,582 + CA264_13565 0.41 -1.1 3,166,583 - CA264_13565 0.41 -0.3 3,166,583 - CA264_13565 0.41 +0.3 3,166,657 - CA264_13565 0.44 -0.4 3,166,713 - CA264_13565 0.46 +1.1 3,166,715 + CA264_13565 0.47 +0.7 3,166,753 + CA264_13565 0.48 +0.2 3,166,754 - CA264_13565 0.48 -0.2 3,166,754 - CA264_13565 0.48 -0.7 3,166,755 + CA264_13565 0.48 +0.2 3,166,756 - CA264_13565 0.48 +0.4 3,166,834 + CA264_13565 0.52 +0.1 3,166,921 + CA264_13565 0.56 -0.4 3,166,921 + CA264_13565 0.56 -0.6 3,166,921 + CA264_13565 0.56 -0.3 3,166,925 - CA264_13565 0.56 -0.1 3,166,966 + CA264_13565 0.58 +1.3 3,166,966 + CA264_13565 0.58 -0.4 3,166,970 - CA264_13565 0.58 +0.9 3,166,973 - CA264_13565 0.58 +0.2 3,167,029 + CA264_13565 0.61 +0.9 3,167,032 - CA264_13565 0.61 -0.4 3,167,065 + CA264_13565 0.62 -0.1 3,167,065 + CA264_13565 0.62 +0.1 3,167,084 + CA264_13565 0.63 -0.7 3,167,085 - CA264_13565 0.63 -0.2 3,167,169 + CA264_13565 0.67 +0.5 3,167,203 - CA264_13565 0.68 +0.6 3,167,248 + CA264_13565 0.70 -0.0 3,167,249 - CA264_13565 0.70 -0.7 3,167,285 + CA264_13565 0.72 +0.3 3,167,285 + CA264_13565 0.72 +1.1 3,167,285 + CA264_13565 0.72 -0.3 3,167,286 - CA264_13565 0.72 -0.2 3,167,286 - CA264_13565 0.72 -2.0 3,167,287 + CA264_13565 0.72 -0.1 3,167,287 + CA264_13565 0.72 -0.9 3,167,287 + CA264_13565 0.72 -0.5 3,167,288 - CA264_13565 0.72 +0.3 3,167,301 + CA264_13565 0.73 -0.6 3,167,302 - CA264_13565 0.73 -0.3 3,167,307 + CA264_13565 0.73 -0.7 3,167,307 + CA264_13565 0.73 -0.6 3,167,308 - CA264_13565 0.73 +0.1 3,167,341 + CA264_13565 0.74 -1.1 3,167,341 + CA264_13565 0.74 -1.1 3,167,341 + CA264_13565 0.74 -0.3 3,167,342 - CA264_13565 0.74 -0.2 3,167,343 + CA264_13565 0.74 +0.2 3,167,343 + CA264_13565 0.74 -0.4 3,167,366 - CA264_13565 0.76 +0.3 3,167,371 + CA264_13565 0.76 -0.7 3,167,375 - CA264_13565 0.76 -0.4 3,167,456 - CA264_13565 0.80 -0.8 3,167,456 - CA264_13565 0.80 +0.1 3,167,490 + CA264_13565 0.81 -0.2 3,167,490 + CA264_13565 0.81 +0.6 3,167,695 - -0.7 3,167,738 + -0.6 3,167,739 - +1.0 3,168,016 - -0.0 3,168,164 + +2.8 3,168,165 - -0.4 3,168,184 - +0.1 3,168,243 + -0.3 3,168,243 + +0.1 3,168,243 + -0.2 3,168,250 - +0.2 3,168,273 + +0.2 3,168,274 - +0.2 3,168,284 + +0.2 3,168,285 - +0.2 3,168,444 + -0.1 3,168,462 + CA264_13570 0.10 -0.6 3,168,462 + CA264_13570 0.10 +0.9 3,168,561 - CA264_13570 0.14 -0.9 3,168,561 - CA264_13570 0.14 +0.3 3,168,562 + CA264_13570 0.14 -0.1 3,168,698 - CA264_13570 0.20 +0.1
Or see this region's nucleotide sequence