Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02895

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02885 and CA264_02890 are separated by 138 nucleotidesCA264_02890 and CA264_02895 are separated by 188 nucleotidesCA264_02895 and CA264_02900 are separated by 32 nucleotidesCA264_02900 and CA264_02905 are separated by 90 nucleotides CA264_02885: CA264_02885 - hypothetical protein, at 658,985 to 659,710 _02885 CA264_02890: CA264_02890 - hypothetical protein, at 659,849 to 660,490 _02890 CA264_02895: CA264_02895 - alpha/beta hydrolase, at 660,679 to 661,674 _02895 CA264_02900: CA264_02900 - hypothetical protein, at 661,707 to 661,934 _02900 CA264_02905: CA264_02905 - hypothetical protein, at 662,025 to 662,831 _02905 Position (kb) 660 661 662Strain fitness (log2 ratio) -1 0 1 2at 659.695 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strandat 659.842 kb on + strandat 659.843 kb on - strandat 659.843 kb on - strandat 659.846 kb on + strandat 659.847 kb on - strandat 659.847 kb on - strandat 659.850 kb on + strandat 659.863 kb on - strandat 659.944 kb on - strand, within CA264_02890at 659.950 kb on - strand, within CA264_02890at 660.117 kb on - strand, within CA264_02890at 660.159 kb on + strand, within CA264_02890at 660.164 kb on - strand, within CA264_02890at 660.222 kb on + strand, within CA264_02890at 660.253 kb on - strand, within CA264_02890at 660.258 kb on + strand, within CA264_02890at 660.354 kb on - strand, within CA264_02890at 660.395 kb on + strand, within CA264_02890at 660.421 kb on - strand, within CA264_02890at 660.651 kb on + strandat 660.658 kb on - strandat 660.673 kb on + strandat 660.695 kb on + strandat 660.720 kb on - strandat 660.844 kb on + strand, within CA264_02895at 660.844 kb on + strand, within CA264_02895at 660.845 kb on - strand, within CA264_02895at 660.926 kb on - strand, within CA264_02895at 660.990 kb on - strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.020 kb on - strand, within CA264_02895at 661.020 kb on - strand, within CA264_02895at 661.021 kb on + strand, within CA264_02895at 661.021 kb on + strand, within CA264_02895at 661.022 kb on - strand, within CA264_02895at 661.024 kb on + strand, within CA264_02895at 661.024 kb on + strand, within CA264_02895at 661.126 kb on - strand, within CA264_02895at 661.199 kb on - strand, within CA264_02895at 661.216 kb on + strand, within CA264_02895at 661.217 kb on - strand, within CA264_02895at 661.237 kb on + strand, within CA264_02895at 661.237 kb on + strand, within CA264_02895at 661.291 kb on + strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.426 kb on + strand, within CA264_02895at 661.442 kb on + strand, within CA264_02895at 661.443 kb on - strand, within CA264_02895at 661.467 kb on - strand, within CA264_02895at 661.502 kb on - strand, within CA264_02895at 661.503 kb on + strand, within CA264_02895at 661.505 kb on + strand, within CA264_02895at 661.505 kb on + strand, within CA264_02895at 661.506 kb on - strand, within CA264_02895at 661.506 kb on - strand, within CA264_02895at 661.506 kb on - strand, within CA264_02895at 661.550 kb on + strand, within CA264_02895at 661.615 kb on - strandat 661.615 kb on - strandat 661.615 kb on - strandat 661.616 kb on + strandat 661.617 kb on - strandat 661.617 kb on - strandat 661.807 kb on + strand, within CA264_02900at 661.808 kb on - strand, within CA264_02900at 661.808 kb on - strand, within CA264_02900at 661.874 kb on + strand, within CA264_02900at 661.875 kb on - strand, within CA264_02900at 661.916 kb on - strandat 661.918 kb on - strandat 661.943 kb on - strandat 661.944 kb on + strandat 661.975 kb on + strandat 662.002 kb on + strandat 662.002 kb on + strandat 662.002 kb on + strandat 662.003 kb on - strandat 662.019 kb on - strandat 662.085 kb on + strandat 662.085 kb on + strandat 662.086 kb on - strandat 662.086 kb on - strandat 662.086 kb on - strandat 662.087 kb on + strandat 662.087 kb on + strandat 662.087 kb on + strandat 662.087 kb on + strandat 662.088 kb on - strandat 662.088 kb on - strandat 662.093 kb on + strandat 662.094 kb on - strandat 662.196 kb on + strand, within CA264_02905at 662.197 kb on - strand, within CA264_02905at 662.197 kb on - strand, within CA264_02905at 662.197 kb on - strand, within CA264_02905at 662.236 kb on + strand, within CA264_02905at 662.241 kb on + strand, within CA264_02905at 662.242 kb on - strand, within CA264_02905at 662.355 kb on + strand, within CA264_02905at 662.356 kb on - strand, within CA264_02905at 662.356 kb on - strand, within CA264_02905at 662.357 kb on + strand, within CA264_02905at 662.357 kb on + strand, within CA264_02905at 662.444 kb on + strand, within CA264_02905at 662.648 kb on + strand, within CA264_02905

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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659,695 - -0.2
659,709 - +1.1
659,709 - +0.0
659,709 - -1.4
659,842 + -0.4
659,843 - -0.2
659,843 - -0.4
659,846 + -0.4
659,847 - -0.2
659,847 - +0.4
659,850 + -0.1
659,863 - -1.0
659,944 - CA264_02890 0.15 -1.2
659,950 - CA264_02890 0.16 -0.4
660,117 - CA264_02890 0.42 -0.2
660,159 + CA264_02890 0.48 -0.4
660,164 - CA264_02890 0.49 +0.1
660,222 + CA264_02890 0.58 -0.6
660,253 - CA264_02890 0.63 -1.4
660,258 + CA264_02890 0.64 -0.2
660,354 - CA264_02890 0.79 +0.7
660,395 + CA264_02890 0.85 +0.6
660,421 - CA264_02890 0.89 -0.9
660,651 + +0.1
660,658 - -0.3
660,673 + +0.0
660,695 + -0.1
660,720 - +0.3
660,844 + CA264_02895 0.17 -0.6
660,844 + CA264_02895 0.17 -0.0
660,845 - CA264_02895 0.17 -0.7
660,926 - CA264_02895 0.25 -0.4
660,990 - CA264_02895 0.31 +0.3
661,019 + CA264_02895 0.34 -1.4
661,019 + CA264_02895 0.34 -0.6
661,019 + CA264_02895 0.34 -0.5
661,020 - CA264_02895 0.34 +0.5
661,020 - CA264_02895 0.34 +0.2
661,021 + CA264_02895 0.34 +0.0
661,021 + CA264_02895 0.34 -1.0
661,022 - CA264_02895 0.34 -0.0
661,024 + CA264_02895 0.35 -0.4
661,024 + CA264_02895 0.35 +0.3
661,126 - CA264_02895 0.45 +0.2
661,199 - CA264_02895 0.52 +0.1
661,216 + CA264_02895 0.54 +0.0
661,217 - CA264_02895 0.54 -0.4
661,237 + CA264_02895 0.56 -0.4
661,237 + CA264_02895 0.56 +0.6
661,291 + CA264_02895 0.61 -0.1
661,295 - CA264_02895 0.62 +0.3
661,295 - CA264_02895 0.62 +1.6
661,295 - CA264_02895 0.62 +0.1
661,396 + CA264_02895 0.72 +0.3
661,396 + CA264_02895 0.72 -1.0
661,396 + CA264_02895 0.72 -0.2
661,426 + CA264_02895 0.75 +0.6
661,442 + CA264_02895 0.77 +1.6
661,443 - CA264_02895 0.77 +0.4
661,467 - CA264_02895 0.79 +0.6
661,502 - CA264_02895 0.83 +1.6
661,503 + CA264_02895 0.83 +0.4
661,505 + CA264_02895 0.83 +0.4
661,505 + CA264_02895 0.83 -0.1
661,506 - CA264_02895 0.83 +0.3
661,506 - CA264_02895 0.83 +0.1
661,506 - CA264_02895 0.83 -0.1
661,550 + CA264_02895 0.87 +0.1
661,615 - -0.6
661,615 - -0.3
661,615 - -0.2
661,616 + +0.1
661,617 - -1.2
661,617 - -0.3
661,807 + CA264_02900 0.44 -1.6
661,808 - CA264_02900 0.44 +0.9
661,808 - CA264_02900 0.44 -0.3
661,874 + CA264_02900 0.73 -0.8
661,875 - CA264_02900 0.74 +0.2
661,916 - -0.4
661,918 - -0.2
661,943 - -1.0
661,944 + +1.0
661,975 + +0.2
662,002 + -0.0
662,002 + +0.1
662,002 + -0.4
662,003 - -0.2
662,019 - +1.3
662,085 + -0.7
662,085 + +0.2
662,086 - +0.2
662,086 - -0.9
662,086 - +0.0
662,087 + -0.8
662,087 + -0.4
662,087 + -0.1
662,087 + -0.4
662,088 - +1.6
662,088 - +0.6
662,093 + +0.2
662,094 - +1.8
662,196 + CA264_02905 0.21 +0.8
662,197 - CA264_02905 0.21 +0.1
662,197 - CA264_02905 0.21 +0.3
662,197 - CA264_02905 0.21 -0.1
662,236 + CA264_02905 0.26 +0.3
662,241 + CA264_02905 0.27 -1.4
662,242 - CA264_02905 0.27 -0.1
662,355 + CA264_02905 0.41 +0.6
662,356 - CA264_02905 0.41 -0.4
662,356 - CA264_02905 0.41 -0.7
662,357 + CA264_02905 0.41 -0.6
662,357 + CA264_02905 0.41 +0.6
662,444 + CA264_02905 0.52 -1.3
662,648 + CA264_02905 0.77 +0.6

Or see this region's nucleotide sequence