Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02350 and CA264_02355 are separated by 148 nucleotides CA264_02355 and CA264_02360 are separated by 179 nucleotides CA264_02360 and CA264_02365 overlap by 8 nucleotides
CA264_02350: CA264_02350 - nicotinate phosphoribosyltransferase, at 542,442 to 543,908
_02350
CA264_02355: CA264_02355 - hypothetical protein, at 544,057 to 545,112
_02355
CA264_02360: CA264_02360 - exodeoxyribonuclease VII small subunit, at 545,292 to 545,555
_02360
CA264_02365: CA264_02365 - exodeoxyribonuclease VII large subunit, at 545,548 to 547,107
_02365
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1
2 at 543.077 kb on - strand, within CA264_02350 at 543.190 kb on - strand, within CA264_02350 at 543.204 kb on - strand, within CA264_02350 at 543.352 kb on + strand, within CA264_02350 at 543.422 kb on + strand, within CA264_02350 at 543.422 kb on + strand, within CA264_02350 at 543.423 kb on - strand, within CA264_02350 at 543.622 kb on + strand, within CA264_02350 at 543.721 kb on + strand, within CA264_02350 at 543.757 kb on + strand, within CA264_02350 at 543.758 kb on - strand, within CA264_02350 at 543.788 kb on - strand at 543.788 kb on - strand at 543.788 kb on - strand at 543.890 kb on - strand at 543.892 kb on - strand at 543.915 kb on + strand at 543.915 kb on + strand at 543.916 kb on - strand at 543.916 kb on - strand at 543.916 kb on - strand at 543.948 kb on + strand at 543.948 kb on + strand at 543.948 kb on + strand at 543.948 kb on + strand at 543.948 kb on + strand at 543.948 kb on + strand at 543.949 kb on - strand at 543.949 kb on - strand at 543.949 kb on - strand at 543.950 kb on + strand at 543.950 kb on + strand at 543.951 kb on - strand at 544.039 kb on + strand at 544.039 kb on + strand at 544.039 kb on + strand at 544.040 kb on - strand at 544.040 kb on - strand at 544.074 kb on + strand at 544.098 kb on + strand at 544.098 kb on + strand at 544.099 kb on - strand at 544.257 kb on + strand, within CA264_02355 at 544.277 kb on + strand, within CA264_02355 at 544.278 kb on - strand, within CA264_02355 at 544.621 kb on - strand, within CA264_02355 at 544.624 kb on + strand, within CA264_02355 at 544.625 kb on - strand, within CA264_02355 at 544.625 kb on - strand, within CA264_02355 at 544.625 kb on - strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.702 kb on + strand, within CA264_02355 at 544.703 kb on - strand, within CA264_02355 at 544.712 kb on - strand, within CA264_02355 at 544.766 kb on - strand, within CA264_02355 at 544.766 kb on - strand, within CA264_02355 at 544.779 kb on + strand, within CA264_02355 at 544.780 kb on - strand, within CA264_02355 at 544.783 kb on + strand, within CA264_02355 at 544.783 kb on + strand, within CA264_02355 at 544.783 kb on + strand, within CA264_02355 at 544.784 kb on - strand, within CA264_02355 at 545.036 kb on - strand at 545.038 kb on + strand at 545.038 kb on + strand at 545.039 kb on - strand at 545.039 kb on - strand at 545.073 kb on + strand at 545.110 kb on + strand at 545.124 kb on - strand at 545.128 kb on + strand at 545.129 kb on - strand at 545.146 kb on - strand at 545.159 kb on + strand at 545.159 kb on + strand at 545.210 kb on - strand at 545.210 kb on - strand at 545.211 kb on + strand at 545.318 kb on + strand at 545.318 kb on + strand at 545.319 kb on - strand, within CA264_02360 at 545.469 kb on + strand, within CA264_02360 at 545.505 kb on + strand, within CA264_02360 at 545.506 kb on - strand, within CA264_02360 at 545.527 kb on + strand, within CA264_02360 at 545.541 kb on + strand at 545.542 kb on - strand at 545.560 kb on - strand at 545.569 kb on + strand at 545.641 kb on - strand at 545.647 kb on - strand at 545.679 kb on - strand at 545.787 kb on + strand, within CA264_02365 at 545.823 kb on + strand, within CA264_02365
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 543,077 - CA264_02350 0.43 +1.2 543,190 - CA264_02350 0.51 -0.5 543,204 - CA264_02350 0.52 -0.9 543,352 + CA264_02350 0.62 -1.0 543,422 + CA264_02350 0.67 -0.3 543,422 + CA264_02350 0.67 +1.0 543,423 - CA264_02350 0.67 +0.0 543,622 + CA264_02350 0.80 +1.3 543,721 + CA264_02350 0.87 -0.6 543,757 + CA264_02350 0.90 -0.1 543,758 - CA264_02350 0.90 -0.3 543,788 - +2.0 543,788 - -1.3 543,788 - +0.4 543,890 - -1.4 543,892 - +0.4 543,915 + -0.5 543,915 + -0.2 543,916 - -0.8 543,916 - -0.6 543,916 - -0.5 543,948 + +0.7 543,948 + -0.5 543,948 + +0.3 543,948 + -0.3 543,948 + -0.2 543,948 + -1.3 543,949 - -1.1 543,949 - -0.0 543,949 - -0.3 543,950 + -0.5 543,950 + -0.4 543,951 - -1.0 544,039 + -1.5 544,039 + -1.7 544,039 + -0.3 544,040 - +0.4 544,040 - -1.9 544,074 + -0.4 544,098 + -0.4 544,098 + +0.6 544,099 - -1.3 544,257 + CA264_02355 0.19 +0.5 544,277 + CA264_02355 0.21 -0.8 544,278 - CA264_02355 0.21 -0.9 544,621 - CA264_02355 0.53 -0.8 544,624 + CA264_02355 0.54 +0.8 544,625 - CA264_02355 0.54 +0.7 544,625 - CA264_02355 0.54 +0.0 544,625 - CA264_02355 0.54 +0.9 544,699 + CA264_02355 0.61 -0.4 544,699 + CA264_02355 0.61 -0.4 544,699 + CA264_02355 0.61 +0.7 544,699 + CA264_02355 0.61 -0.7 544,702 + CA264_02355 0.61 +0.4 544,703 - CA264_02355 0.61 -0.1 544,712 - CA264_02355 0.62 -0.9 544,766 - CA264_02355 0.67 +1.3 544,766 - CA264_02355 0.67 +0.8 544,779 + CA264_02355 0.68 -0.6 544,780 - CA264_02355 0.68 +0.1 544,783 + CA264_02355 0.69 +0.2 544,783 + CA264_02355 0.69 +0.1 544,783 + CA264_02355 0.69 -0.2 544,784 - CA264_02355 0.69 -0.8 545,036 - -0.2 545,038 + -0.0 545,038 + -0.8 545,039 - -1.5 545,039 - -0.5 545,073 + -0.4 545,110 + -0.5 545,124 - -0.2 545,128 + +1.0 545,129 - -0.1 545,146 - -1.2 545,159 + -0.3 545,159 + +0.0 545,210 - -0.7 545,210 - -0.7 545,211 + -0.2 545,318 + -0.3 545,318 + -0.9 545,319 - CA264_02360 0.10 -0.2 545,469 + CA264_02360 0.67 +0.1 545,505 + CA264_02360 0.81 -0.7 545,506 - CA264_02360 0.81 -1.0 545,527 + CA264_02360 0.89 -1.3 545,541 + -0.5 545,542 - -0.3 545,560 - +0.0 545,569 + -0.6 545,641 - -0.4 545,647 - +0.5 545,679 - -1.3 545,787 + CA264_02365 0.15 -1.0 545,823 + CA264_02365 0.18 -1.8
Or see this region's nucleotide sequence