Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00200

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00190 and CA264_00195 are separated by 88 nucleotidesCA264_00195 and CA264_00200 are separated by 41 nucleotidesCA264_00200 and CA264_00205 are separated by 43 nucleotides CA264_00190: CA264_00190 - RagB/SusD family nutrient uptake outer membrane protein, at 49,376 to 50,896 _00190 CA264_00195: CA264_00195 - ribonuclease HII, at 50,985 to 51,584 _00195 CA264_00200: CA264_00200 - response regulator, at 51,626 to 52,060 _00200 CA264_00205: CA264_00205 - histidine kinase, at 52,104 to 53,585 _00205 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 50.641 kb on + strand, within CA264_00190at 50.666 kb on - strand, within CA264_00190at 50.666 kb on - strand, within CA264_00190at 50.753 kb on - strandat 50.753 kb on - strandat 50.753 kb on - strandat 50.894 kb on + strandat 50.894 kb on + strandat 50.894 kb on + strandat 50.894 kb on + strandat 50.898 kb on - strandat 50.970 kb on - strandat 50.971 kb on + strandat 50.972 kb on - strandat 50.972 kb on - strandat 51.010 kb on - strandat 51.010 kb on - strandat 51.082 kb on + strand, within CA264_00195at 51.083 kb on - strand, within CA264_00195at 51.083 kb on - strand, within CA264_00195at 51.083 kb on - strand, within CA264_00195at 51.113 kb on - strand, within CA264_00195at 51.227 kb on + strand, within CA264_00195at 51.228 kb on - strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.236 kb on - strand, within CA264_00195at 51.295 kb on - strand, within CA264_00195at 51.373 kb on - strand, within CA264_00195at 51.373 kb on - strand, within CA264_00195at 51.457 kb on - strand, within CA264_00195at 51.694 kb on + strand, within CA264_00200at 51.796 kb on + strand, within CA264_00200at 51.862 kb on + strand, within CA264_00200at 51.863 kb on - strand, within CA264_00200at 51.897 kb on - strand, within CA264_00200at 51.957 kb on + strand, within CA264_00200at 52.040 kb on - strandat 52.062 kb on - strandat 52.064 kb on - strandat 52.064 kb on - strandat 52.064 kb on - strandat 52.283 kb on + strand, within CA264_00205at 52.284 kb on - strand, within CA264_00205at 52.397 kb on - strand, within CA264_00205at 52.400 kb on + strand, within CA264_00205at 52.401 kb on - strand, within CA264_00205at 52.401 kb on - strand, within CA264_00205at 52.444 kb on - strand, within CA264_00205at 52.444 kb on - strand, within CA264_00205at 52.446 kb on - strand, within CA264_00205at 52.467 kb on + strand, within CA264_00205at 52.651 kb on + strand, within CA264_00205at 52.651 kb on + strand, within CA264_00205at 52.652 kb on - strand, within CA264_00205at 52.696 kb on - strand, within CA264_00205at 52.696 kb on - strand, within CA264_00205at 52.786 kb on - strand, within CA264_00205at 52.814 kb on + strand, within CA264_00205at 52.814 kb on + strand, within CA264_00205at 52.932 kb on + strand, within CA264_00205at 52.933 kb on - strand, within CA264_00205at 52.958 kb on + strand, within CA264_00205at 52.958 kb on + strand, within CA264_00205at 52.959 kb on - strand, within CA264_00205at 52.959 kb on - strand, within CA264_00205at 52.963 kb on + strand, within CA264_00205at 52.964 kb on - strand, within CA264_00205at 52.964 kb on - strand, within CA264_00205at 52.964 kb on - strand, within CA264_00205at 52.966 kb on + strand, within CA264_00205at 52.966 kb on + strand, within CA264_00205at 53.034 kb on + strand, within CA264_00205at 53.035 kb on - strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.045 kb on + strand, within CA264_00205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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50,641 + CA264_00190 0.83 +0.6
50,666 - CA264_00190 0.85 +0.2
50,666 - CA264_00190 0.85 -0.2
50,753 - -0.4
50,753 - -1.2
50,753 - -0.5
50,894 + -0.3
50,894 + -0.8
50,894 + -1.2
50,894 + -0.1
50,898 - -0.2
50,970 - -1.1
50,971 + -0.7
50,972 - -0.4
50,972 - +0.5
51,010 - -1.2
51,010 - +1.7
51,082 + CA264_00195 0.16 -1.4
51,083 - CA264_00195 0.16 +0.5
51,083 - CA264_00195 0.16 -0.3
51,083 - CA264_00195 0.16 -1.2
51,113 - CA264_00195 0.21 -1.9
51,227 + CA264_00195 0.40 -1.0
51,228 - CA264_00195 0.41 +0.4
51,235 + CA264_00195 0.42 +0.4
51,235 + CA264_00195 0.42 -0.1
51,235 + CA264_00195 0.42 -0.7
51,236 - CA264_00195 0.42 -0.4
51,295 - CA264_00195 0.52 -0.1
51,373 - CA264_00195 0.65 +0.4
51,373 - CA264_00195 0.65 -0.5
51,457 - CA264_00195 0.79 -0.7
51,694 + CA264_00200 0.16 -1.6
51,796 + CA264_00200 0.39 +0.2
51,862 + CA264_00200 0.54 -0.3
51,863 - CA264_00200 0.54 -0.5
51,897 - CA264_00200 0.62 +0.1
51,957 + CA264_00200 0.76 -0.6
52,040 - -0.6
52,062 - +0.0
52,064 - +0.9
52,064 - -0.2
52,064 - +0.5
52,283 + CA264_00205 0.12 -1.3
52,284 - CA264_00205 0.12 -0.4
52,397 - CA264_00205 0.20 -0.2
52,400 + CA264_00205 0.20 +0.1
52,401 - CA264_00205 0.20 -0.1
52,401 - CA264_00205 0.20 +0.2
52,444 - CA264_00205 0.23 +1.0
52,444 - CA264_00205 0.23 -1.5
52,446 - CA264_00205 0.23 +0.0
52,467 + CA264_00205 0.24 +1.7
52,651 + CA264_00205 0.37 -0.6
52,651 + CA264_00205 0.37 +0.9
52,652 - CA264_00205 0.37 -0.9
52,696 - CA264_00205 0.40 +0.2
52,696 - CA264_00205 0.40 -0.1
52,786 - CA264_00205 0.46 -0.5
52,814 + CA264_00205 0.48 +0.1
52,814 + CA264_00205 0.48 -0.4
52,932 + CA264_00205 0.56 -0.8
52,933 - CA264_00205 0.56 +0.1
52,958 + CA264_00205 0.58 -0.1
52,958 + CA264_00205 0.58 +0.0
52,959 - CA264_00205 0.58 +1.2
52,959 - CA264_00205 0.58 -1.4
52,963 + CA264_00205 0.58 +0.0
52,964 - CA264_00205 0.58 -0.1
52,964 - CA264_00205 0.58 -0.6
52,964 - CA264_00205 0.58 -0.1
52,966 + CA264_00205 0.58 -0.1
52,966 + CA264_00205 0.58 -0.1
53,034 + CA264_00205 0.63 +0.1
53,035 - CA264_00205 0.63 +0.3
53,036 + CA264_00205 0.63 -0.2
53,036 + CA264_00205 0.63 -1.7
53,036 + CA264_00205 0.63 +0.2
53,036 + CA264_00205 0.63 -0.5
53,045 + CA264_00205 0.63 -0.2

Or see this region's nucleotide sequence