Strain Fitness in Agrobacterium fabrum C58 around Atu6049

Experiment: 5-Aminovaleric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6048 and Atu6049 are separated by 202 nucleotidesAtu6049 and Atu6050 are separated by 233 nucleotidesAtu6050 and Atu6051 are separated by 8 nucleotides Atu6048: Atu6048 - conserved hypothetical protein, at 58,747 to 61,257 Atu6048 Atu6049: Atu6049 - hypothetical protein, at 61,460 to 62,647 Atu6049 Atu6050: Atu6050 - conserved hypothetical protein, at 62,881 to 63,597 Atu6050 Atu6051: Atu6051 - conserved hypothetical protein, at 63,606 to 64,190 Atu6051 Position (kb) 61 62 63Strain fitness (log2 ratio) -1 0 1 2 3 4at 60.466 kb on + strand, within Atu6048at 60.507 kb on - strand, within Atu6048at 60.569 kb on + strand, within Atu6048at 60.577 kb on - strand, within Atu6048at 60.579 kb on + strand, within Atu6048at 60.587 kb on - strand, within Atu6048at 60.587 kb on - strand, within Atu6048at 60.621 kb on - strand, within Atu6048at 60.671 kb on + strand, within Atu6048at 60.679 kb on - strand, within Atu6048at 60.691 kb on + strand, within Atu6048at 60.701 kb on + strand, within Atu6048at 60.740 kb on - strand, within Atu6048at 60.878 kb on + strand, within Atu6048at 60.885 kb on + strand, within Atu6048at 60.915 kb on + strand, within Atu6048at 60.920 kb on + strand, within Atu6048at 60.920 kb on + strand, within Atu6048at 60.930 kb on - strand, within Atu6048at 60.978 kb on + strand, within Atu6048at 61.080 kb on + strandat 61.080 kb on + strandat 61.131 kb on - strandat 61.146 kb on - strandat 61.148 kb on + strandat 61.148 kb on + strandat 61.148 kb on + strandat 61.155 kb on + strandat 61.156 kb on - strandat 61.156 kb on - strandat 61.180 kb on - strandat 61.218 kb on + strandat 61.303 kb on + strandat 61.311 kb on - strandat 61.394 kb on + strandat 61.445 kb on + strandat 61.452 kb on - strandat 61.492 kb on - strandat 61.498 kb on + strandat 61.518 kb on - strandat 61.553 kb on + strandat 61.615 kb on - strand, within Atu6049at 61.667 kb on - strand, within Atu6049at 61.686 kb on - strand, within Atu6049at 61.809 kb on + strand, within Atu6049at 61.842 kb on - strand, within Atu6049at 61.933 kb on + strand, within Atu6049at 61.933 kb on + strand, within Atu6049at 61.964 kb on + strand, within Atu6049at 61.976 kb on + strand, within Atu6049at 61.978 kb on + strand, within Atu6049at 61.978 kb on + strand, within Atu6049at 62.030 kb on + strand, within Atu6049at 62.038 kb on - strand, within Atu6049at 62.066 kb on + strand, within Atu6049at 62.066 kb on + strand, within Atu6049at 62.084 kb on - strand, within Atu6049at 62.084 kb on - strand, within Atu6049at 62.166 kb on + strand, within Atu6049at 62.273 kb on - strand, within Atu6049at 62.278 kb on + strand, within Atu6049at 62.286 kb on - strand, within Atu6049at 62.291 kb on - strand, within Atu6049at 62.331 kb on + strand, within Atu6049at 62.331 kb on + strand, within Atu6049at 62.331 kb on + strand, within Atu6049at 62.331 kb on + strand, within Atu6049at 62.339 kb on - strand, within Atu6049at 62.339 kb on - strand, within Atu6049at 62.339 kb on - strand, within Atu6049at 62.339 kb on - strand, within Atu6049at 62.350 kb on + strand, within Atu6049at 62.409 kb on + strand, within Atu6049at 62.518 kb on + strand, within Atu6049at 62.518 kb on + strand, within Atu6049at 62.518 kb on + strand, within Atu6049at 62.518 kb on + strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.526 kb on - strand, within Atu6049at 62.555 kb on - strandat 62.563 kb on + strandat 62.571 kb on - strandat 62.661 kb on + strandat 62.734 kb on + strandat 62.734 kb on - strandat 62.787 kb on + strandat 62.793 kb on - strandat 62.795 kb on - strandat 62.800 kb on - strandat 62.919 kb on + strandat 62.927 kb on - strandat 62.983 kb on - strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.015 kb on + strand, within Atu6050at 63.023 kb on - strand, within Atu6050at 63.023 kb on - strand, within Atu6050at 63.106 kb on + strand, within Atu6050at 63.167 kb on - strand, within Atu6050at 63.200 kb on + strand, within Atu6050at 63.207 kb on - strand, within Atu6050at 63.218 kb on + strand, within Atu6050at 63.242 kb on - strand, within Atu6050at 63.330 kb on + strand, within Atu6050at 63.337 kb on + strand, within Atu6050at 63.357 kb on + strand, within Atu6050at 63.364 kb on + strand, within Atu6050at 63.367 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.429 kb on - strand, within Atu6050at 63.446 kb on + strand, within Atu6050at 63.523 kb on - strand, within Atu6050at 63.573 kb on - strandat 63.625 kb on + strandat 63.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (N)
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60,466 + Atu6048 0.68 -0.5
60,507 - Atu6048 0.70 +0.3
60,569 + Atu6048 0.73 +1.2
60,577 - Atu6048 0.73 +0.8
60,579 + Atu6048 0.73 -0.2
60,587 - Atu6048 0.73 -0.1
60,587 - Atu6048 0.73 -0.6
60,621 - Atu6048 0.75 +0.3
60,671 + Atu6048 0.77 -1.3
60,679 - Atu6048 0.77 -0.6
60,691 + Atu6048 0.77 -0.5
60,701 + Atu6048 0.78 +1.1
60,740 - Atu6048 0.79 +0.4
60,878 + Atu6048 0.85 +1.6
60,885 + Atu6048 0.85 +0.1
60,915 + Atu6048 0.86 -0.6
60,920 + Atu6048 0.87 -0.1
60,920 + Atu6048 0.87 +0.2
60,930 - Atu6048 0.87 +0.1
60,978 + Atu6048 0.89 +1.9
61,080 + +1.0
61,080 + +0.6
61,131 - +1.5
61,146 - +1.5
61,148 + +2.1
61,148 + +0.4
61,148 + +1.0
61,155 + +0.1
61,156 - +0.5
61,156 - -0.7
61,180 - +0.6
61,218 + -1.0
61,303 + -0.1
61,311 - -0.0
61,394 + -1.4
61,445 + -0.4
61,452 - -0.4
61,492 - -0.8
61,498 + +1.4
61,518 - +0.4
61,553 + +0.9
61,615 - Atu6049 0.13 -0.2
61,667 - Atu6049 0.17 +1.9
61,686 - Atu6049 0.19 +0.0
61,809 + Atu6049 0.29 -0.1
61,842 - Atu6049 0.32 +0.2
61,933 + Atu6049 0.40 +0.0
61,933 + Atu6049 0.40 +1.0
61,964 + Atu6049 0.42 +0.1
61,976 + Atu6049 0.43 +1.1
61,978 + Atu6049 0.44 +0.6
61,978 + Atu6049 0.44 +0.3
62,030 + Atu6049 0.48 -0.5
62,038 - Atu6049 0.49 -0.2
62,066 + Atu6049 0.51 -0.5
62,066 + Atu6049 0.51 +0.8
62,084 - Atu6049 0.53 -0.5
62,084 - Atu6049 0.53 -0.2
62,166 + Atu6049 0.59 -0.2
62,273 - Atu6049 0.68 -0.8
62,278 + Atu6049 0.69 -0.3
62,286 - Atu6049 0.70 +1.6
62,291 - Atu6049 0.70 -0.3
62,331 + Atu6049 0.73 -0.2
62,331 + Atu6049 0.73 +0.5
62,331 + Atu6049 0.73 -0.7
62,331 + Atu6049 0.73 +1.1
62,339 - Atu6049 0.74 -0.4
62,339 - Atu6049 0.74 +0.5
62,339 - Atu6049 0.74 +0.2
62,339 - Atu6049 0.74 -0.1
62,350 + Atu6049 0.75 +0.2
62,409 + Atu6049 0.80 +0.9
62,518 + Atu6049 0.89 +0.8
62,518 + Atu6049 0.89 +1.1
62,518 + Atu6049 0.89 +0.4
62,518 + Atu6049 0.89 +2.4
62,526 - Atu6049 0.90 +0.5
62,526 - Atu6049 0.90 -0.6
62,526 - Atu6049 0.90 +0.0
62,526 - Atu6049 0.90 +0.8
62,526 - Atu6049 0.90 +1.4
62,526 - Atu6049 0.90 -1.2
62,526 - Atu6049 0.90 +2.2
62,526 - Atu6049 0.90 +0.7
62,555 - +0.1
62,563 + +0.3
62,571 - +0.8
62,661 + +0.6
62,734 + +0.6
62,734 - +1.9
62,787 + +0.6
62,793 - +1.7
62,795 - +0.7
62,800 - +0.8
62,919 + -0.8
62,927 - -0.6
62,983 - Atu6050 0.14 -0.4
63,015 + Atu6050 0.19 +1.2
63,015 + Atu6050 0.19 +0.6
63,015 + Atu6050 0.19 +0.4
63,015 + Atu6050 0.19 +0.4
63,015 + Atu6050 0.19 +1.4
63,015 + Atu6050 0.19 +1.4
63,015 + Atu6050 0.19 -0.6
63,023 - Atu6050 0.20 +3.9
63,023 - Atu6050 0.20 +0.5
63,106 + Atu6050 0.31 +1.6
63,167 - Atu6050 0.40 +0.6
63,200 + Atu6050 0.44 +0.1
63,207 - Atu6050 0.45 +2.1
63,218 + Atu6050 0.47 -1.5
63,242 - Atu6050 0.50 +0.9
63,330 + Atu6050 0.63 +0.7
63,337 + Atu6050 0.64 +0.6
63,357 + Atu6050 0.66 +1.1
63,364 + Atu6050 0.67 -0.6
63,367 + Atu6050 0.68 +0.3
63,378 + Atu6050 0.69 -0.9
63,378 + Atu6050 0.69 +2.4
63,378 + Atu6050 0.69 +0.3
63,378 + Atu6050 0.69 -0.6
63,378 + Atu6050 0.69 +0.1
63,378 + Atu6050 0.69 -0.7
63,378 + Atu6050 0.69 +3.9
63,378 + Atu6050 0.69 -0.1
63,378 + Atu6050 0.69 +0.0
63,378 + Atu6050 0.69 -0.2
63,378 + Atu6050 0.69 -0.1
63,378 + Atu6050 0.69 +0.7
63,378 + Atu6050 0.69 +0.2
63,386 - Atu6050 0.70 +1.0
63,386 - Atu6050 0.70 +1.1
63,386 - Atu6050 0.70 +0.2
63,386 - Atu6050 0.70 +0.8
63,386 - Atu6050 0.70 -0.7
63,386 - Atu6050 0.70 +1.1
63,386 - Atu6050 0.70 +3.4
63,386 - Atu6050 0.70 +1.3
63,429 - Atu6050 0.76 +0.8
63,446 + Atu6050 0.79 -0.0
63,523 - Atu6050 0.90 -0.2
63,573 - +0.0
63,625 + -0.5
63,635 - +0.1

Or see this region's nucleotide sequence