Strain Fitness in Agrobacterium fabrum C58 around Atu6048

Experiment: 5-Aminovaleric (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Aminovaleric (N)
57,748	+		Atu6047	0.26	+0.2
57,760	+		Atu6047	0.27	+0.4
57,827	-		Atu6047	0.33	-0.6
57,851	+		Atu6047	0.35	+0.6
57,857	+		Atu6047	0.36	-2.1
57,867	+		Atu6047	0.37	-0.9
57,916	-		Atu6047	0.41	+0.6
57,924	-		Atu6047	0.42	+0.1
57,946	-		Atu6047	0.44	+1.1
57,964	-		Atu6047	0.46	-0.8
57,972	+		Atu6047	0.46	+0.4
58,059	+		Atu6047	0.54	+2.4
58,067	-		Atu6047	0.55	-0.6
58,084	+		Atu6047	0.56	+1.6
58,084	+		Atu6047	0.56	+0.9
58,101	+		Atu6047	0.58	+0.8
58,109	-		Atu6047	0.59	-0.0
58,129	-		Atu6047	0.61	+0.5
58,143	+		Atu6047	0.62	-0.1
58,151	-		Atu6047	0.63	-0.9
58,199	+		Atu6047	0.67	+0.9
58,235	-		Atu6047	0.70	+0.1
58,271	-		Atu6047	0.73	+0.1
58,310	+		Atu6047	0.77	+1.2
58,310	+		Atu6047	0.77	+2.1
58,310	+		Atu6047	0.77	+0.1
58,310	+		Atu6047	0.77	-0.4
58,310	+		Atu6047	0.77	-0.3
58,310	+		Atu6047	0.77	-0.5
58,318	-		Atu6047	0.78	-0.3
58,318	-		Atu6047	0.78	+1.4
58,318	-		Atu6047	0.78	-1.7
58,318	-		Atu6047	0.78	+2.4
58,328	-		Atu6047	0.78	-0.7
58,416	+		Atu6047	0.86	-1.0
58,465	+				-0.1
58,472	+				+0.3
58,535	+				-0.6
58,568	-				+0.8
58,614	-				+0.1
58,756	-				-0.8
58,758	-				+0.3
58,763	+				+0.2
58,766	-				+0.7
58,802	-				-0.5
58,802	-				+0.3
58,817	-				+0.4
58,843	+				+0.8
58,937	-				-0.2
59,040	+		Atu6048	0.12	+0.2
59,043	-		Atu6048	0.12	+0.8
59,043	-		Atu6048	0.12	+0.9
59,076	-		Atu6048	0.13	+2.5
59,152	-		Atu6048	0.16	-1.0
59,156	+		Atu6048	0.16	-0.9
59,156	+		Atu6048	0.16	+0.6
59,156	+		Atu6048	0.16	-2.4
59,156	+		Atu6048	0.16	+0.6
59,164	-		Atu6048	0.17	+1.6
59,164	-		Atu6048	0.17	+0.3
59,177	+		Atu6048	0.17	-0.7
59,197	-		Atu6048	0.18	+1.4
59,197	-		Atu6048	0.18	+1.3
59,211	+		Atu6048	0.18	-0.0
59,253	-		Atu6048	0.20	+0.0
59,254	-		Atu6048	0.20	-0.5
59,349	+		Atu6048	0.24	-1.1
59,458	-		Atu6048	0.28	-0.4
59,483	-		Atu6048	0.29	+1.1
59,483	-		Atu6048	0.29	+0.0
59,493	-		Atu6048	0.30	-0.2
59,493	-		Atu6048	0.30	+0.6
59,493	-		Atu6048	0.30	+1.9
59,494	+		Atu6048	0.30	+2.9
59,495	+		Atu6048	0.30	+1.2
59,503	-		Atu6048	0.30	+1.1
59,546	+		Atu6048	0.32	+0.6
59,554	-		Atu6048	0.32	-0.2
59,556	+		Atu6048	0.32	-0.1
59,556	+		Atu6048	0.32	+3.6
59,556	+		Atu6048	0.32	-0.2
59,564	+		Atu6048	0.33	-0.3
59,564	-		Atu6048	0.33	+1.8
59,564	-		Atu6048	0.33	+1.4
59,564	-		Atu6048	0.33	-1.5
59,579	+		Atu6048	0.33	+1.1
59,587	-		Atu6048	0.33	-0.5
59,587	-		Atu6048	0.33	+0.6
59,597	-		Atu6048	0.34	+0.7
59,611	+		Atu6048	0.34	+1.8
59,686	+		Atu6048	0.37	+1.8
59,733	-		Atu6048	0.39	+0.2
59,736	-		Atu6048	0.39	+0.3
59,749	-		Atu6048	0.40	-0.3
59,774	-		Atu6048	0.41	+1.5
59,868	+		Atu6048	0.45	+0.3
59,868	+		Atu6048	0.45	-0.7
59,889	-		Atu6048	0.45	+0.2
59,889	-		Atu6048	0.45	+0.4
59,892	+		Atu6048	0.46	+0.1
59,966	+		Atu6048	0.49	+0.2
59,966	+		Atu6048	0.49	-1.8
59,972	+		Atu6048	0.49	-0.8
59,974	-		Atu6048	0.49	+0.2
59,976	+		Atu6048	0.49	+0.4
60,002	+		Atu6048	0.50	+1.6
60,015	-		Atu6048	0.50	-0.1
60,059	+		Atu6048	0.52	+0.0
60,059	+		Atu6048	0.52	+2.4
60,067	-		Atu6048	0.53	+0.6
60,067	-		Atu6048	0.53	+0.8
60,094	+		Atu6048	0.54	-0.3
60,131	+		Atu6048	0.55	+0.2
60,131	+		Atu6048	0.55	-0.0
60,131	+		Atu6048	0.55	+0.8
60,139	-		Atu6048	0.55	+0.4
60,155	+		Atu6048	0.56	-1.1
60,155	+		Atu6048	0.56	-0.7
60,163	-		Atu6048	0.56	+1.9
60,221	-		Atu6048	0.59	+0.8
60,221	-		Atu6048	0.59	+2.1
60,276	-		Atu6048	0.61	+2.4
60,287	-		Atu6048	0.61	-0.5
60,309	-		Atu6048	0.62	-0.3
60,420	-		Atu6048	0.67	+0.4
60,425	-		Atu6048	0.67	+0.1
60,438	+		Atu6048	0.67	-1.5
60,447	-		Atu6048	0.68	+0.2
60,466	+		Atu6048	0.68	-0.5
60,507	-		Atu6048	0.70	+0.3
60,569	+		Atu6048	0.73	+1.2
60,577	-		Atu6048	0.73	+0.8
60,579	+		Atu6048	0.73	-0.2
60,587	-		Atu6048	0.73	-0.1
60,587	-		Atu6048	0.73	-0.6
60,621	-		Atu6048	0.75	+0.3
60,671	+		Atu6048	0.77	-1.3
60,679	-		Atu6048	0.77	-0.6
60,691	+		Atu6048	0.77	-0.5
60,701	+		Atu6048	0.78	+1.1
60,740	-		Atu6048	0.79	+0.4
60,878	+		Atu6048	0.85	+1.6
60,885	+		Atu6048	0.85	+0.1
60,915	+		Atu6048	0.86	-0.6
60,920	+		Atu6048	0.87	-0.1
60,920	+		Atu6048	0.87	+0.2
60,930	-		Atu6048	0.87	+0.1
60,978	+		Atu6048	0.89	+1.9
61,080	+				+1.0
61,080	+				+0.6
61,131	-				+1.5
61,146	-				+1.5
61,148	+				+2.1
61,148	+				+0.4
61,148	+				+1.0
61,155	+				+0.1
61,156	-				+0.5
61,156	-				-0.7
61,180	-				+0.6
61,218	+				-1.0
61,303	+				-0.1
61,311	-				-0.0
61,394	+				-1.4
61,445	+				-0.4
61,452	-				-0.4
61,492	-				-0.8
61,498	+				+1.4
61,518	-				+0.4
61,553	+				+0.9
61,615	-		Atu6049	0.13	-0.2
61,667	-		Atu6049	0.17	+1.9
61,686	-		Atu6049	0.19	+0.0
61,809	+		Atu6049	0.29	-0.1
61,842	-		Atu6049	0.32	+0.2
61,933	+		Atu6049	0.40	+0.0
61,933	+		Atu6049	0.40	+1.0
61,964	+		Atu6049	0.42	+0.1
61,976	+		Atu6049	0.43	+1.1
61,978	+		Atu6049	0.44	+0.6
61,978	+		Atu6049	0.44	+0.3
62,030	+		Atu6049	0.48	-0.5
62,038	-		Atu6049	0.49	-0.2
62,066	+		Atu6049	0.51	-0.5
62,066	+		Atu6049	0.51	+0.8
62,084	-		Atu6049	0.53	-0.5
62,084	-		Atu6049	0.53	-0.2
62,166	+		Atu6049	0.59	-0.2