Strain Fitness in Agrobacterium fabrum C58 around Atu5051

Experiment: 5-Aminovaleric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5049 and Atu5050 are separated by 12 nucleotidesAtu5050 and Atu5051 overlap by 4 nucleotidesAtu5051 and Atu5052 are separated by 165 nucleotidesAtu5052 and Atu5053 are separated by 72 nucleotides Atu5049: Atu5049 - hypothetical protein, at 48,390 to 49,286 Atu5049 Atu5050: Atu5050 - hypothetical protein, at 49,299 to 50,111 Atu5050 Atu5051: Atu5051 - ATP-dependent DNA ligase, at 50,108 to 51,145 Atu5051 Atu5052: Atu5052 - small heat shock protein, at 51,311 to 51,787 Atu5052 Atu5053: Atu5053 - hypothetical protein, at 51,860 to 52,159 Atu5053 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2 3at 49.161 kb on - strand, within Atu5049at 49.213 kb on - strandat 49.215 kb on + strandat 49.226 kb on + strandat 49.271 kb on - strandat 49.285 kb on + strandat 49.295 kb on + strandat 49.295 kb on + strandat 49.356 kb on + strandat 49.364 kb on - strandat 49.391 kb on + strand, within Atu5050at 49.419 kb on + strand, within Atu5050at 49.419 kb on + strand, within Atu5050at 49.419 kb on + strand, within Atu5050at 49.419 kb on + strand, within Atu5050at 49.419 kb on + strand, within Atu5050at 49.419 kb on + strand, within Atu5050at 49.427 kb on - strand, within Atu5050at 49.427 kb on - strand, within Atu5050at 49.427 kb on - strand, within Atu5050at 49.427 kb on - strand, within Atu5050at 49.444 kb on + strand, within Atu5050at 49.477 kb on - strand, within Atu5050at 49.487 kb on + strand, within Atu5050at 49.487 kb on + strand, within Atu5050at 49.495 kb on - strand, within Atu5050at 49.495 kb on - strand, within Atu5050at 49.495 kb on - strand, within Atu5050at 49.527 kb on - strand, within Atu5050at 49.547 kb on - strand, within Atu5050at 49.565 kb on + strand, within Atu5050at 49.596 kb on + strand, within Atu5050at 49.598 kb on + strand, within Atu5050at 49.611 kb on + strand, within Atu5050at 49.619 kb on - strand, within Atu5050at 49.624 kb on - strand, within Atu5050at 49.665 kb on + strand, within Atu5050at 49.673 kb on - strand, within Atu5050at 49.682 kb on + strand, within Atu5050at 49.709 kb on - strand, within Atu5050at 49.780 kb on + strand, within Atu5050at 49.786 kb on - strand, within Atu5050at 49.787 kb on + strand, within Atu5050at 49.787 kb on + strand, within Atu5050at 49.787 kb on + strand, within Atu5050at 49.787 kb on + strand, within Atu5050at 49.795 kb on - strand, within Atu5050at 49.817 kb on - strand, within Atu5050at 49.837 kb on - strand, within Atu5050at 49.916 kb on + strand, within Atu5050at 50.181 kb on + strandat 50.205 kb on - strandat 50.223 kb on + strand, within Atu5051at 50.245 kb on + strand, within Atu5051at 50.287 kb on + strand, within Atu5051at 50.315 kb on + strand, within Atu5051at 50.326 kb on + strand, within Atu5051at 50.326 kb on + strand, within Atu5051at 50.326 kb on + strand, within Atu5051at 50.326 kb on + strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.334 kb on - strand, within Atu5051at 50.365 kb on - strand, within Atu5051at 50.399 kb on + strand, within Atu5051at 50.429 kb on - strand, within Atu5051at 50.452 kb on + strand, within Atu5051at 50.461 kb on + strand, within Atu5051at 50.537 kb on - strand, within Atu5051at 50.544 kb on + strand, within Atu5051at 50.560 kb on - strand, within Atu5051at 50.560 kb on - strand, within Atu5051at 50.639 kb on - strand, within Atu5051at 50.672 kb on - strand, within Atu5051at 50.709 kb on + strand, within Atu5051at 50.732 kb on + strand, within Atu5051at 50.732 kb on + strand, within Atu5051at 50.732 kb on + strand, within Atu5051at 50.754 kb on - strand, within Atu5051at 50.787 kb on - strand, within Atu5051at 50.848 kb on + strand, within Atu5051at 50.860 kb on + strand, within Atu5051at 50.939 kb on + strand, within Atu5051at 50.996 kb on + strand, within Atu5051at 51.004 kb on - strand, within Atu5051at 51.004 kb on - strand, within Atu5051at 51.004 kb on - strand, within Atu5051at 51.004 kb on - strand, within Atu5051at 51.009 kb on - strand, within Atu5051at 51.009 kb on - strand, within Atu5051at 51.068 kb on + strandat 51.241 kb on + strandat 51.244 kb on - strandat 51.249 kb on - strandat 51.249 kb on - strandat 51.249 kb on - strandat 51.285 kb on - strandat 51.299 kb on - strandat 51.301 kb on + strandat 51.301 kb on + strandat 51.301 kb on + strandat 51.301 kb on + strandat 51.309 kb on - strandat 51.309 kb on - strandat 51.309 kb on - strandat 51.309 kb on - strandat 51.320 kb on + strandat 51.330 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.338 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.390 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.443 kb on + strand, within Atu5052at 51.550 kb on - strand, within Atu5052at 51.556 kb on + strand, within Atu5052at 51.594 kb on + strand, within Atu5052at 51.657 kb on + strand, within Atu5052at 51.657 kb on - strand, within Atu5052at 51.737 kb on - strand, within Atu5052at 51.753 kb on + strandat 51.753 kb on + strandat 51.753 kb on + strandat 51.753 kb on + strandat 51.758 kb on + strandat 51.761 kb on - strandat 51.761 kb on - strandat 51.855 kb on + strandat 51.858 kb on - strandat 51.882 kb on - strandat 52.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (N)
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49,161 - Atu5049 0.86 +0.3
49,213 - +0.3
49,215 + +0.2
49,226 + -0.0
49,271 - +0.8
49,285 + +1.7
49,295 + +1.3
49,295 + +1.6
49,356 + +2.8
49,364 - +0.8
49,391 + Atu5050 0.11 -0.5
49,419 + Atu5050 0.15 +0.3
49,419 + Atu5050 0.15 -0.4
49,419 + Atu5050 0.15 +0.2
49,419 + Atu5050 0.15 +0.6
49,419 + Atu5050 0.15 -0.1
49,419 + Atu5050 0.15 +1.8
49,427 - Atu5050 0.16 -0.6
49,427 - Atu5050 0.16 +0.3
49,427 - Atu5050 0.16 +0.1
49,427 - Atu5050 0.16 +0.9
49,444 + Atu5050 0.18 -0.0
49,477 - Atu5050 0.22 +0.8
49,487 + Atu5050 0.23 +0.2
49,487 + Atu5050 0.23 +1.5
49,495 - Atu5050 0.24 +0.7
49,495 - Atu5050 0.24 +0.1
49,495 - Atu5050 0.24 +1.1
49,527 - Atu5050 0.28 +2.2
49,547 - Atu5050 0.31 +1.3
49,565 + Atu5050 0.33 -0.6
49,596 + Atu5050 0.37 +0.2
49,598 + Atu5050 0.37 +0.2
49,611 + Atu5050 0.38 -0.4
49,619 - Atu5050 0.39 -0.2
49,624 - Atu5050 0.40 +1.6
49,665 + Atu5050 0.45 -0.0
49,673 - Atu5050 0.46 +0.2
49,682 + Atu5050 0.47 -0.2
49,709 - Atu5050 0.50 +0.4
49,780 + Atu5050 0.59 +1.1
49,786 - Atu5050 0.60 +0.6
49,787 + Atu5050 0.60 +0.2
49,787 + Atu5050 0.60 +1.8
49,787 + Atu5050 0.60 +0.5
49,787 + Atu5050 0.60 +0.4
49,795 - Atu5050 0.61 +1.8
49,817 - Atu5050 0.64 +0.3
49,837 - Atu5050 0.66 +1.2
49,916 + Atu5050 0.76 +0.7
50,181 + -0.1
50,205 - -0.4
50,223 + Atu5051 0.11 +0.1
50,245 + Atu5051 0.13 +1.6
50,287 + Atu5051 0.17 +0.9
50,315 + Atu5051 0.20 +0.5
50,326 + Atu5051 0.21 +0.5
50,326 + Atu5051 0.21 +0.2
50,326 + Atu5051 0.21 +0.2
50,326 + Atu5051 0.21 +0.6
50,334 - Atu5051 0.22 -0.0
50,334 - Atu5051 0.22 +0.2
50,334 - Atu5051 0.22 -0.4
50,334 - Atu5051 0.22 +1.4
50,334 - Atu5051 0.22 -1.3
50,334 - Atu5051 0.22 +0.2
50,334 - Atu5051 0.22 +0.6
50,334 - Atu5051 0.22 +1.4
50,334 - Atu5051 0.22 +0.5
50,334 - Atu5051 0.22 +1.6
50,365 - Atu5051 0.25 -0.1
50,399 + Atu5051 0.28 +0.5
50,429 - Atu5051 0.31 +1.3
50,452 + Atu5051 0.33 +3.0
50,461 + Atu5051 0.34 +0.3
50,537 - Atu5051 0.41 +0.5
50,544 + Atu5051 0.42 +1.2
50,560 - Atu5051 0.44 -0.2
50,560 - Atu5051 0.44 -1.0
50,639 - Atu5051 0.51 +0.5
50,672 - Atu5051 0.54 +1.3
50,709 + Atu5051 0.58 +0.3
50,732 + Atu5051 0.60 +2.8
50,732 + Atu5051 0.60 +1.2
50,732 + Atu5051 0.60 +1.3
50,754 - Atu5051 0.62 +2.8
50,787 - Atu5051 0.65 +1.1
50,848 + Atu5051 0.71 +0.8
50,860 + Atu5051 0.72 +0.4
50,939 + Atu5051 0.80 -0.7
50,996 + Atu5051 0.86 -0.2
51,004 - Atu5051 0.86 +1.8
51,004 - Atu5051 0.86 +2.0
51,004 - Atu5051 0.86 +0.3
51,004 - Atu5051 0.86 +1.4
51,009 - Atu5051 0.87 -0.2
51,009 - Atu5051 0.87 +1.3
51,068 + +1.2
51,241 + +0.8
51,244 - +0.4
51,249 - +0.7
51,249 - +0.1
51,249 - +0.4
51,285 - -0.4
51,299 - +1.3
51,301 + -0.1
51,301 + +0.7
51,301 + +0.3
51,301 + +0.8
51,309 - +1.4
51,309 - +1.9
51,309 - -0.4
51,309 - +1.5
51,320 + +0.7
51,330 + -0.0
51,335 + +0.3
51,335 + +0.6
51,335 + +0.4
51,335 + +0.0
51,335 + -0.4
51,335 + +0.7
51,335 + +0.4
51,335 + -0.1
51,338 - -0.6
51,343 - +1.0
51,343 - +1.9
51,343 - +0.7
51,343 - -0.0
51,343 - +1.6
51,390 - Atu5052 0.17 +0.1
51,430 - Atu5052 0.25 +3.0
51,430 - Atu5052 0.25 +2.9
51,430 - Atu5052 0.25 +0.7
51,430 - Atu5052 0.25 +0.4
51,443 + Atu5052 0.28 -0.3
51,550 - Atu5052 0.50 +0.4
51,556 + Atu5052 0.51 -0.2
51,594 + Atu5052 0.59 +0.5
51,657 + Atu5052 0.73 -0.2
51,657 - Atu5052 0.73 -0.7
51,737 - Atu5052 0.89 +2.2
51,753 + -0.5
51,753 + -0.1
51,753 + +2.2
51,753 + -0.8
51,758 + +0.4
51,761 - -0.2
51,761 - +0.3
51,855 + +0.7
51,858 - +2.2
51,882 - +0.3
52,142 + +0.5

Or see this region's nucleotide sequence