Strain Fitness in Pseudomonas simiae WCS417 around PS417_03395

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03390 and PS417_03395 are separated by 141 nucleotidesPS417_03395 and PS417_03400 are separated by 44 nucleotides PS417_03390: PS417_03390 - AraC family transcriptional regulator, at 778,338 to 779,159 _03390 PS417_03395: PS417_03395 - lysine transporter LysE, at 779,301 to 779,939 _03395 PS417_03400: PS417_03400 - D-alanine--D-alanine ligase, at 779,984 to 781,078 _03400 Position (kb) 779 780Strain fitness (log2 ratio) -2 -1 0 1at 778.393 kb on + strandat 778.394 kb on - strandat 778.519 kb on + strand, within PS417_03390at 778.520 kb on - strand, within PS417_03390at 778.666 kb on + strand, within PS417_03390at 778.667 kb on - strand, within PS417_03390at 778.667 kb on - strand, within PS417_03390at 778.888 kb on + strand, within PS417_03390at 778.889 kb on - strand, within PS417_03390at 778.889 kb on - strand, within PS417_03390at 779.041 kb on + strand, within PS417_03390at 779.041 kb on + strand, within PS417_03390at 779.041 kb on + strand, within PS417_03390at 779.042 kb on - strand, within PS417_03390at 779.042 kb on - strand, within PS417_03390at 779.042 kb on - strand, within PS417_03390at 779.189 kb on + strandat 779.189 kb on + strandat 779.190 kb on - strandat 779.190 kb on - strandat 779.231 kb on + strandat 779.259 kb on + strandat 779.259 kb on + strandat 779.514 kb on - strand, within PS417_03395at 779.532 kb on + strand, within PS417_03395at 779.532 kb on + strand, within PS417_03395at 779.533 kb on - strand, within PS417_03395at 779.533 kb on - strand, within PS417_03395at 779.562 kb on + strand, within PS417_03395at 779.562 kb on + strand, within PS417_03395at 779.563 kb on - strand, within PS417_03395at 779.571 kb on + strand, within PS417_03395at 779.587 kb on + strand, within PS417_03395at 779.587 kb on + strand, within PS417_03395at 779.902 kb on - strandat 779.960 kb on + strandat 779.961 kb on - strandat 779.961 kb on - strandat 780.000 kb on + strandat 780.007 kb on + strandat 780.472 kb on + strand, within PS417_03400at 780.488 kb on - strand, within PS417_03400at 780.488 kb on - strand, within PS417_03400at 780.488 kb on - strand, within PS417_03400at 780.488 kb on - strand, within PS417_03400at 780.594 kb on - strand, within PS417_03400at 780.743 kb on + strand, within PS417_03400at 780.762 kb on - strand, within PS417_03400

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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778,393 + +0.9
778,394 - +0.1
778,519 + PS417_03390 0.22 +0.1
778,520 - PS417_03390 0.22 -1.1
778,666 + PS417_03390 0.40 -0.3
778,667 - PS417_03390 0.40 +0.1
778,667 - PS417_03390 0.40 -1.1
778,888 + PS417_03390 0.67 +1.2
778,889 - PS417_03390 0.67 -0.0
778,889 - PS417_03390 0.67 +0.0
779,041 + PS417_03390 0.86 +0.2
779,041 + PS417_03390 0.86 -2.4
779,041 + PS417_03390 0.86 -0.2
779,042 - PS417_03390 0.86 +0.3
779,042 - PS417_03390 0.86 +0.7
779,042 - PS417_03390 0.86 -0.4
779,189 + +0.6
779,189 + -0.7
779,190 - -0.1
779,190 - -1.2
779,231 + -0.1
779,259 + -0.5
779,259 + +0.1
779,514 - PS417_03395 0.33 +0.8
779,532 + PS417_03395 0.36 -0.7
779,532 + PS417_03395 0.36 +1.1
779,533 - PS417_03395 0.36 -0.5
779,533 - PS417_03395 0.36 -0.7
779,562 + PS417_03395 0.41 -0.2
779,562 + PS417_03395 0.41 -0.2
779,563 - PS417_03395 0.41 -0.5
779,571 + PS417_03395 0.42 +0.6
779,587 + PS417_03395 0.45 -1.8
779,587 + PS417_03395 0.45 -0.6
779,902 - +0.0
779,960 + +0.1
779,961 - +0.7
779,961 - +0.2
780,000 + -0.2
780,007 + -1.3
780,472 + PS417_03400 0.45 -0.5
780,488 - PS417_03400 0.46 -2.3
780,488 - PS417_03400 0.46 +0.5
780,488 - PS417_03400 0.46 -0.5
780,488 - PS417_03400 0.46 +0.3
780,594 - PS417_03400 0.56 +0.3
780,743 + PS417_03400 0.69 +0.6
780,762 - PS417_03400 0.71 +0.0

Or see this region's nucleotide sequence