Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23110 and PS417_23115 are separated by 176 nucleotides PS417_23115 and PS417_23120 overlap by 13 nucleotides
PS417_23110: PS417_23110 - 2-isopropylmalate synthase, at 5,008,765 to 5,010,444
_23110
PS417_23115: PS417_23115 - carbon-nitrogen hydrolase, at 5,010,621 to 5,011,412
_23115
PS417_23120: PS417_23120 - aminotransferase, at 5,011,400 to 5,012,548
_23120
Position (kb) 5010
5011
5012 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5009.641 kb on + strand at 5009.641 kb on + strand, within PS417_23110 at 5009.641 kb on + strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5010.050 kb on - strand, within PS417_23110 at 5010.070 kb on + strand, within PS417_23110 at 5010.084 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.308 kb on - strand at 5010.458 kb on + strand at 5010.502 kb on - strand at 5010.561 kb on + strand at 5010.638 kb on + strand at 5010.829 kb on + strand, within PS417_23115 at 5010.829 kb on + strand, within PS417_23115 at 5010.965 kb on - strand, within PS417_23115 at 5011.174 kb on + strand, within PS417_23115 at 5011.175 kb on - strand, within PS417_23115 at 5011.216 kb on + strand, within PS417_23115 at 5011.412 kb on + strand at 5011.497 kb on + strand at 5011.590 kb on + strand, within PS417_23120 at 5011.609 kb on - strand, within PS417_23120 at 5011.628 kb on - strand, within PS417_23120 at 5011.776 kb on + strand, within PS417_23120 at 5011.776 kb on + strand, within PS417_23120 at 5011.776 kb on + strand, within PS417_23120 at 5011.777 kb on - strand, within PS417_23120 at 5011.777 kb on - strand, within PS417_23120 at 5011.827 kb on + strand, within PS417_23120 at 5011.828 kb on - strand, within PS417_23120 at 5011.854 kb on + strand, within PS417_23120 at 5011.854 kb on + strand, within PS417_23120 at 5011.855 kb on - strand, within PS417_23120 at 5011.940 kb on + strand, within PS417_23120 at 5011.974 kb on + strand, within PS417_23120 at 5011.974 kb on + strand, within PS417_23120 at 5011.975 kb on - strand, within PS417_23120 at 5012.184 kb on + strand, within PS417_23120 at 5012.184 kb on + strand, within PS417_23120 at 5012.184 kb on + strand, within PS417_23120 at 5012.185 kb on - strand, within PS417_23120 at 5012.185 kb on - strand, within PS417_23120 at 5012.185 kb on - strand, within PS417_23120 at 5012.185 kb on - strand, within PS417_23120 at 5012.185 kb on - strand, within PS417_23120 at 5012.193 kb on + strand, within PS417_23120 at 5012.194 kb on - strand, within PS417_23120
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 5,009,641 + -1.4 5,009,641 + PS417_23110 0.52 -3.3 5,009,641 + PS417_23110 0.52 -4.4 5,009,642 - PS417_23110 0.52 -3.0 5,009,642 - PS417_23110 0.52 -4.0 5,009,642 - PS417_23110 0.52 -2.0 5,009,642 - PS417_23110 0.52 -1.7 5,010,050 - PS417_23110 0.76 -6.3 5,010,070 + PS417_23110 0.78 -1.9 5,010,084 + PS417_23110 0.79 -4.7 5,010,259 + PS417_23110 0.89 -1.0 5,010,259 + PS417_23110 0.89 -1.7 5,010,259 + PS417_23110 0.89 -0.9 5,010,308 - -3.0 5,010,458 + +0.5 5,010,502 - +0.4 5,010,561 + -0.1 5,010,638 + -0.0 5,010,829 + PS417_23115 0.26 -0.1 5,010,829 + PS417_23115 0.26 -1.6 5,010,965 - PS417_23115 0.43 +0.1 5,011,174 + PS417_23115 0.70 -0.4 5,011,175 - PS417_23115 0.70 -0.1 5,011,216 + PS417_23115 0.75 -0.1 5,011,412 + -0.3 5,011,497 + +0.1 5,011,590 + PS417_23120 0.17 -0.5 5,011,609 - PS417_23120 0.18 +0.1 5,011,628 - PS417_23120 0.20 +0.1 5,011,776 + PS417_23120 0.33 -1.1 5,011,776 + PS417_23120 0.33 +0.3 5,011,776 + PS417_23120 0.33 +0.2 5,011,777 - PS417_23120 0.33 +0.1 5,011,777 - PS417_23120 0.33 +0.7 5,011,827 + PS417_23120 0.37 -0.6 5,011,828 - PS417_23120 0.37 +0.5 5,011,854 + PS417_23120 0.40 +0.6 5,011,854 + PS417_23120 0.40 -0.3 5,011,855 - PS417_23120 0.40 +0.4 5,011,940 + PS417_23120 0.47 -1.2 5,011,974 + PS417_23120 0.50 -0.5 5,011,974 + PS417_23120 0.50 +0.1 5,011,975 - PS417_23120 0.50 +0.0 5,012,184 + PS417_23120 0.68 -0.8 5,012,184 + PS417_23120 0.68 -0.5 5,012,184 + PS417_23120 0.68 -0.3 5,012,185 - PS417_23120 0.68 +0.1 5,012,185 - PS417_23120 0.68 -0.6 5,012,185 - PS417_23120 0.68 -0.7 5,012,185 - PS417_23120 0.68 +0.1 5,012,185 - PS417_23120 0.68 +0.2 5,012,193 + PS417_23120 0.69 -0.3 5,012,194 - PS417_23120 0.69 -0.4
Or see this region's nucleotide sequence