Strain Fitness in Pseudomonas simiae WCS417 around PS417_11640

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11635 and PS417_11640 are separated by 113 nucleotidesPS417_11640 and PS417_11645 overlap by 4 nucleotides PS417_11635: PS417_11635 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,503,250 to 2,504,605 _11635 PS417_11640: PS417_11640 - GntR family transcriptional regulator, at 2,504,719 to 2,505,450 _11640 PS417_11645: PS417_11645 - chemotaxis protein, at 2,505,447 to 2,507,087 _11645 Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -2 -1 0 1at 2504.509 kb on - strandat 2504.680 kb on + strandat 2504.681 kb on - strandat 2504.830 kb on + strand, within PS417_11640at 2505.082 kb on + strand, within PS417_11640at 2505.149 kb on + strand, within PS417_11640at 2505.150 kb on - strand, within PS417_11640at 2505.150 kb on - strand, within PS417_11640at 2505.150 kb on - strand, within PS417_11640at 2505.150 kb on - strand, within PS417_11640

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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2,504,509 - -0.3
2,504,680 + -1.0
2,504,681 - -1.9
2,504,830 + PS417_11640 0.15 -0.0
2,505,082 + PS417_11640 0.50 -1.9
2,505,149 + PS417_11640 0.59 -0.2
2,505,150 - PS417_11640 0.59 -0.2
2,505,150 - PS417_11640 0.59 -1.3
2,505,150 - PS417_11640 0.59 -0.1
2,505,150 - PS417_11640 0.59 -2.0

Or see this region's nucleotide sequence