Strain Fitness in Pseudomonas simiae WCS417 around PS417_06290

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06285 and PS417_06290 are separated by 137 nucleotidesPS417_06290 and PS417_06295 are separated by 174 nucleotides PS417_06285: PS417_06285 - DNA polymerase III subunit alpha, at 1,393,493 to 1,397,014 _06285 PS417_06290: PS417_06290 - acetyl-CoA carboxylase subunit alpha, at 1,397,152 to 1,398,099 _06290 PS417_06295: PS417_06295 - tRNA(Ile)-lysidine synthetase, at 1,398,274 to 1,399,593 _06295 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -1 0 1at 1398.088 kb on + strandat 1398.088 kb on + strandat 1398.089 kb on - strandat 1398.089 kb on - strandat 1398.097 kb on + strandat 1398.232 kb on + strandat 1398.246 kb on + strandat 1398.246 kb on + strandat 1398.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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1,398,088 + -1.5
1,398,088 + -0.2
1,398,089 - +1.0
1,398,089 - -0.1
1,398,097 + +0.1
1,398,232 + -1.2
1,398,246 + -0.4
1,398,246 + +0.9
1,398,247 - +0.2

Or see this region's nucleotide sequence