Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3833

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3832 and Echvi_3833 are separated by 143 nucleotidesEchvi_3833 and Echvi_3834 are separated by 85 nucleotides Echvi_3832: Echvi_3832 - hypothetical protein, at 4,578,597 to 4,580,153 _3832 Echvi_3833: Echvi_3833 - 2-isopropylmalate synthase (EC 2.3.3.13) (from data), at 4,580,297 to 4,581,469 _3833 Echvi_3834: Echvi_3834 - signal recognition particle protein, at 4,581,555 to 4,582,895 _3834 Position (kb) 4580 4581 4582Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4579.306 kb on + strand, within Echvi_3832at 4579.306 kb on + strand, within Echvi_3832at 4579.306 kb on + strand, within Echvi_3832at 4579.306 kb on + strand, within Echvi_3832at 4579.306 kb on + strand, within Echvi_3832at 4579.316 kb on + strand, within Echvi_3832at 4579.316 kb on + strand, within Echvi_3832at 4579.327 kb on + strand, within Echvi_3832at 4579.327 kb on + strand, within Echvi_3832at 4579.327 kb on + strand, within Echvi_3832at 4579.328 kb on - strand, within Echvi_3832at 4579.334 kb on - strand, within Echvi_3832at 4579.346 kb on - strand, within Echvi_3832at 4579.349 kb on + strand, within Echvi_3832at 4579.349 kb on + strand, within Echvi_3832at 4579.349 kb on + strand, within Echvi_3832at 4579.350 kb on - strand, within Echvi_3832at 4579.447 kb on + strand, within Echvi_3832at 4579.448 kb on - strand, within Echvi_3832at 4579.448 kb on - strand, within Echvi_3832at 4579.532 kb on - strand, within Echvi_3832at 4579.534 kb on + strand, within Echvi_3832at 4579.534 kb on + strand, within Echvi_3832at 4579.534 kb on + strand, within Echvi_3832at 4579.535 kb on - strand, within Echvi_3832at 4579.535 kb on - strand, within Echvi_3832at 4579.543 kb on - strand, within Echvi_3832at 4579.674 kb on + strand, within Echvi_3832at 4579.706 kb on + strand, within Echvi_3832at 4579.706 kb on + strand, within Echvi_3832at 4579.707 kb on - strand, within Echvi_3832at 4579.707 kb on - strand, within Echvi_3832at 4579.817 kb on + strand, within Echvi_3832at 4579.819 kb on + strand, within Echvi_3832at 4579.819 kb on + strand, within Echvi_3832at 4579.819 kb on + strand, within Echvi_3832at 4579.820 kb on - strand, within Echvi_3832at 4579.820 kb on - strand, within Echvi_3832at 4579.832 kb on + strand, within Echvi_3832at 4579.833 kb on - strand, within Echvi_3832at 4579.833 kb on - strand, within Echvi_3832at 4579.833 kb on - strand, within Echvi_3832at 4579.834 kb on + strand, within Echvi_3832at 4579.834 kb on + strand, within Echvi_3832at 4579.835 kb on - strand, within Echvi_3832at 4579.835 kb on - strand, within Echvi_3832at 4579.836 kb on + strand, within Echvi_3832at 4579.836 kb on + strand, within Echvi_3832at 4579.836 kb on + strand, within Echvi_3832at 4579.837 kb on - strand, within Echvi_3832at 4579.837 kb on - strand, within Echvi_3832at 4579.837 kb on - strand, within Echvi_3832at 4579.837 kb on - strand, within Echvi_3832at 4579.841 kb on + strand, within Echvi_3832at 4579.842 kb on - strand, within Echvi_3832at 4579.866 kb on + strand, within Echvi_3832at 4579.883 kb on + strand, within Echvi_3832at 4579.883 kb on + strand, within Echvi_3832at 4579.927 kb on + strand, within Echvi_3832at 4579.927 kb on + strand, within Echvi_3832at 4579.927 kb on + strand, within Echvi_3832at 4580.000 kb on - strandat 4580.082 kb on - strandat 4580.128 kb on - strandat 4580.297 kb on - strandat 4580.314 kb on - strandat 4580.363 kb on - strandat 4580.464 kb on + strand, within Echvi_3833at 4580.542 kb on - strand, within Echvi_3833at 4580.543 kb on + strand, within Echvi_3833at 4580.568 kb on - strand, within Echvi_3833at 4580.638 kb on + strand, within Echvi_3833at 4580.676 kb on + strand, within Echvi_3833at 4580.676 kb on + strand, within Echvi_3833at 4580.715 kb on - strand, within Echvi_3833at 4580.747 kb on + strand, within Echvi_3833at 4580.747 kb on + strand, within Echvi_3833at 4580.748 kb on - strand, within Echvi_3833at 4580.850 kb on + strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.856 kb on - strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.872 kb on - strand, within Echvi_3833at 4580.872 kb on - strand, within Echvi_3833at 4580.881 kb on - strand, within Echvi_3833at 4580.881 kb on - strand, within Echvi_3833at 4580.912 kb on - strand, within Echvi_3833at 4580.912 kb on - strand, within Echvi_3833at 4580.943 kb on + strand, within Echvi_3833at 4580.981 kb on - strand, within Echvi_3833at 4581.056 kb on - strand, within Echvi_3833at 4581.068 kb on + strand, within Echvi_3833at 4581.094 kb on - strand, within Echvi_3833at 4581.124 kb on + strand, within Echvi_3833at 4581.125 kb on - strand, within Echvi_3833at 4581.125 kb on - strand, within Echvi_3833at 4581.148 kb on + strand, within Echvi_3833at 4581.160 kb on - strand, within Echvi_3833at 4581.160 kb on - strand, within Echvi_3833at 4581.252 kb on + strand, within Echvi_3833at 4581.287 kb on - strand, within Echvi_3833at 4581.334 kb on + strand, within Echvi_3833at 4581.334 kb on + strand, within Echvi_3833at 4581.335 kb on - strand, within Echvi_3833at 4581.335 kb on - strand, within Echvi_3833at 4581.335 kb on - strand, within Echvi_3833at 4581.365 kb on + strandat 4581.366 kb on - strandat 4581.366 kb on - strandat 4581.556 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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4,579,306 + Echvi_3832 0.46 -2.7
4,579,306 + Echvi_3832 0.46 -4.2
4,579,306 + Echvi_3832 0.46 -3.6
4,579,306 + Echvi_3832 0.46 -2.6
4,579,306 + Echvi_3832 0.46 -3.8
4,579,316 + Echvi_3832 0.46 -0.6
4,579,316 + Echvi_3832 0.46 -4.1
4,579,327 + Echvi_3832 0.47 -3.8
4,579,327 + Echvi_3832 0.47 -3.0
4,579,327 + Echvi_3832 0.47 -2.9
4,579,328 - Echvi_3832 0.47 -2.1
4,579,334 - Echvi_3832 0.47 -2.9
4,579,346 - Echvi_3832 0.48 -1.6
4,579,349 + Echvi_3832 0.48 -2.2
4,579,349 + Echvi_3832 0.48 -2.5
4,579,349 + Echvi_3832 0.48 -0.6
4,579,350 - Echvi_3832 0.48 -3.1
4,579,447 + Echvi_3832 0.55 -3.0
4,579,448 - Echvi_3832 0.55 -4.4
4,579,448 - Echvi_3832 0.55 -1.6
4,579,532 - Echvi_3832 0.60 -2.2
4,579,534 + Echvi_3832 0.60 -0.4
4,579,534 + Echvi_3832 0.60 -0.2
4,579,534 + Echvi_3832 0.60 -0.7
4,579,535 - Echvi_3832 0.60 -1.6
4,579,535 - Echvi_3832 0.60 -1.9
4,579,543 - Echvi_3832 0.61 -3.5
4,579,674 + Echvi_3832 0.69 -2.6
4,579,706 + Echvi_3832 0.71 +2.0
4,579,706 + Echvi_3832 0.71 -1.4
4,579,707 - Echvi_3832 0.71 -1.6
4,579,707 - Echvi_3832 0.71 -2.4
4,579,817 + Echvi_3832 0.78 -0.1
4,579,819 + Echvi_3832 0.78 -2.3
4,579,819 + Echvi_3832 0.78 -2.4
4,579,819 + Echvi_3832 0.78 -1.0
4,579,820 - Echvi_3832 0.79 -0.8
4,579,820 - Echvi_3832 0.79 -4.0
4,579,832 + Echvi_3832 0.79 -0.6
4,579,833 - Echvi_3832 0.79 -2.7
4,579,833 - Echvi_3832 0.79 -1.7
4,579,833 - Echvi_3832 0.79 -3.0
4,579,834 + Echvi_3832 0.79 +0.5
4,579,834 + Echvi_3832 0.79 +0.1
4,579,835 - Echvi_3832 0.80 -2.4
4,579,835 - Echvi_3832 0.80 -1.9
4,579,836 + Echvi_3832 0.80 +1.2
4,579,836 + Echvi_3832 0.80 -0.2
4,579,836 + Echvi_3832 0.80 -0.0
4,579,837 - Echvi_3832 0.80 -2.3
4,579,837 - Echvi_3832 0.80 -3.0
4,579,837 - Echvi_3832 0.80 -2.6
4,579,837 - Echvi_3832 0.80 -1.0
4,579,841 + Echvi_3832 0.80 +0.8
4,579,842 - Echvi_3832 0.80 -0.4
4,579,866 + Echvi_3832 0.82 -1.6
4,579,883 + Echvi_3832 0.83 +0.6
4,579,883 + Echvi_3832 0.83 +0.5
4,579,927 + Echvi_3832 0.85 -0.4
4,579,927 + Echvi_3832 0.85 -0.4
4,579,927 + Echvi_3832 0.85 -0.3
4,580,000 - -4.7
4,580,082 - -5.2
4,580,128 - -4.5
4,580,297 - -1.6
4,580,314 - -2.1
4,580,363 - -4.6
4,580,464 + Echvi_3833 0.14 -4.2
4,580,542 - Echvi_3833 0.21 -1.4
4,580,543 + Echvi_3833 0.21 -2.4
4,580,568 - Echvi_3833 0.23 -2.2
4,580,638 + Echvi_3833 0.29 -0.4
4,580,676 + Echvi_3833 0.32 -4.0
4,580,676 + Echvi_3833 0.32 -4.1
4,580,715 - Echvi_3833 0.36 -2.9
4,580,747 + Echvi_3833 0.38 -0.4
4,580,747 + Echvi_3833 0.38 +0.6
4,580,748 - Echvi_3833 0.38 -3.9
4,580,850 + Echvi_3833 0.47 -2.1
4,580,851 - Echvi_3833 0.47 -2.7
4,580,851 - Echvi_3833 0.47 -0.4
4,580,851 - Echvi_3833 0.47 -3.3
4,580,851 - Echvi_3833 0.47 -2.7
4,580,851 - Echvi_3833 0.47 -2.0
4,580,856 - Echvi_3833 0.48 -3.6
4,580,871 + Echvi_3833 0.49 +0.2
4,580,871 + Echvi_3833 0.49 -1.2
4,580,871 + Echvi_3833 0.49 -0.2
4,580,871 + Echvi_3833 0.49 -3.1
4,580,872 - Echvi_3833 0.49 -2.4
4,580,872 - Echvi_3833 0.49 -1.3
4,580,881 - Echvi_3833 0.50 +1.2
4,580,881 - Echvi_3833 0.50 -0.2
4,580,912 - Echvi_3833 0.52 -4.3
4,580,912 - Echvi_3833 0.52 -1.0
4,580,943 + Echvi_3833 0.55 +0.6
4,580,981 - Echvi_3833 0.58 -2.4
4,581,056 - Echvi_3833 0.65 -1.3
4,581,068 + Echvi_3833 0.66 -1.8
4,581,094 - Echvi_3833 0.68 +0.2
4,581,124 + Echvi_3833 0.71 -3.0
4,581,125 - Echvi_3833 0.71 -3.8
4,581,125 - Echvi_3833 0.71 -2.7
4,581,148 + Echvi_3833 0.73 -2.5
4,581,160 - Echvi_3833 0.74 -3.5
4,581,160 - Echvi_3833 0.74 -0.2
4,581,252 + Echvi_3833 0.81 -0.2
4,581,287 - Echvi_3833 0.84 -3.5
4,581,334 + Echvi_3833 0.88 -2.3
4,581,334 + Echvi_3833 0.88 -3.3
4,581,335 - Echvi_3833 0.88 -2.7
4,581,335 - Echvi_3833 0.88 -1.3
4,581,335 - Echvi_3833 0.88 -3.0
4,581,365 + -2.2
4,581,366 - -3.7
4,581,366 - -3.9
4,581,556 + +1.8

Or see this region's nucleotide sequence