Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3427

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3425 and Echvi_3426 are separated by 89 nucleotidesEchvi_3426 and Echvi_3427 are separated by 24 nucleotidesEchvi_3427 and Echvi_3428 are separated by 109 nucleotidesEchvi_3428 and Echvi_3429 are separated by 419 nucleotides Echvi_3425: Echvi_3425 - threonyl-tRNA synthetase, at 4,057,564 to 4,059,513 _3425 Echvi_3426: Echvi_3426 - translation initiation factor IF-3, at 4,059,603 to 4,060,154 _3426 Echvi_3427: Echvi_3427 - ribosomal protein L35, at 4,060,179 to 4,060,373 _3427 Echvi_3428: Echvi_3428 - ribosomal protein L20, at 4,060,483 to 4,060,827 _3428 Echvi_3429: Echvi_3429 - Predicted endonuclease containing a URI domain, at 4,061,247 to 4,061,426 _3429 Position (kb) 4060 4061Strain fitness (log2 ratio) -2 -1 0 1at 4060.145 kb on + strandat 4060.167 kb on + strandat 4060.911 kb on + strandat 4060.926 kb on + strandat 4060.928 kb on + strandat 4060.931 kb on + strandat 4060.931 kb on + strandat 4060.932 kb on - strandat 4061.014 kb on + strandat 4061.015 kb on - strandat 4061.081 kb on + strandat 4061.093 kb on - strandat 4061.093 kb on - strandat 4061.093 kb on - strandat 4061.143 kb on + strandat 4061.160 kb on - strandat 4061.161 kb on + strandat 4061.161 kb on + strandat 4061.162 kb on - strandat 4061.162 kb on - strandat 4061.162 kb on - strandat 4061.164 kb on + strandat 4061.165 kb on - strandat 4061.165 kb on - strandat 4061.259 kb on - strandat 4061.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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4,060,145 + -0.3
4,060,167 + -0.2
4,060,911 + -2.1
4,060,926 + +0.2
4,060,928 + -1.2
4,060,931 + +1.1
4,060,931 + -1.8
4,060,932 - -0.9
4,061,014 + -1.5
4,061,015 - +0.4
4,061,081 + -1.5
4,061,093 - +0.7
4,061,093 - -0.7
4,061,093 - +0.3
4,061,143 + +0.1
4,061,160 - +1.2
4,061,161 + -2.5
4,061,161 + -2.2
4,061,162 - -0.9
4,061,162 - +0.2
4,061,162 - +0.5
4,061,164 + -0.8
4,061,165 - -1.4
4,061,165 - -2.0
4,061,259 - -2.0
4,061,259 - -2.1

Or see this region's nucleotide sequence