Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21400

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21395 and CA264_21400 are separated by 480 nucleotidesCA264_21400 and CA264_21405 are separated by 116 nucleotidesCA264_21405 and CA264_21410 overlap by 4 nucleotides CA264_21395: CA264_21395 - hypothetical protein, at 142,122 to 142,967 _21395 CA264_21400: CA264_21400 - hypothetical protein, at 143,448 to 145,292 _21400 CA264_21405: CA264_21405 - hypothetical protein, at 145,409 to 146,134 _21405 CA264_21410: CA264_21410 - hypothetical protein, at 146,131 to 147,102 _21410 Position (kb) 143 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.612 kb on + strand, within CA264_21395at 142.717 kb on + strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.777 kb on + strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.789 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.853 kb on - strand, within CA264_21395at 142.937 kb on - strandat 142.957 kb on - strandat 142.959 kb on + strandat 142.972 kb on + strandat 142.976 kb on - strandat 143.038 kb on + strandat 143.098 kb on + strandat 143.098 kb on + strandat 143.101 kb on + strandat 143.101 kb on + strandat 143.137 kb on + strandat 143.217 kb on + strandat 143.218 kb on - strandat 143.353 kb on - strandat 143.437 kb on + strandat 143.439 kb on + strandat 143.439 kb on + strandat 143.507 kb on + strandat 143.507 kb on + strandat 143.509 kb on + strandat 143.517 kb on + strandat 143.518 kb on - strandat 143.518 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.622 kb on - strandat 143.654 kb on + strand, within CA264_21400at 143.661 kb on - strand, within CA264_21400at 143.724 kb on - strand, within CA264_21400at 143.739 kb on + strand, within CA264_21400at 143.769 kb on + strand, within CA264_21400at 143.770 kb on - strand, within CA264_21400at 143.770 kb on - strand, within CA264_21400at 143.826 kb on + strand, within CA264_21400at 143.840 kb on + strand, within CA264_21400at 143.841 kb on - strand, within CA264_21400at 143.841 kb on - strand, within CA264_21400at 143.846 kb on - strand, within CA264_21400at 143.850 kb on - strand, within CA264_21400at 143.861 kb on - strand, within CA264_21400at 143.979 kb on - strand, within CA264_21400at 144.036 kb on + strand, within CA264_21400at 144.037 kb on - strand, within CA264_21400at 144.041 kb on - strand, within CA264_21400at 144.041 kb on - strand, within CA264_21400at 144.080 kb on - strand, within CA264_21400at 144.080 kb on - strand, within CA264_21400at 144.090 kb on - strand, within CA264_21400at 144.093 kb on + strand, within CA264_21400at 144.093 kb on + strand, within CA264_21400at 144.093 kb on + strand, within CA264_21400at 144.094 kb on - strand, within CA264_21400at 144.094 kb on - strand, within CA264_21400at 144.094 kb on - strand, within CA264_21400at 144.103 kb on + strand, within CA264_21400at 144.103 kb on + strand, within CA264_21400at 144.104 kb on - strand, within CA264_21400at 144.104 kb on - strand, within CA264_21400at 144.104 kb on - strand, within CA264_21400at 144.111 kb on - strand, within CA264_21400at 144.111 kb on - strand, within CA264_21400at 144.113 kb on + strand, within CA264_21400at 144.114 kb on - strand, within CA264_21400at 144.129 kb on + strand, within CA264_21400at 144.141 kb on - strand, within CA264_21400at 144.193 kb on - strand, within CA264_21400at 144.198 kb on - strand, within CA264_21400at 144.250 kb on - strand, within CA264_21400at 144.250 kb on - strand, within CA264_21400at 144.253 kb on + strand, within CA264_21400at 144.253 kb on + strand, within CA264_21400at 144.254 kb on - strand, within CA264_21400at 144.254 kb on - strand, within CA264_21400at 144.254 kb on - strand, within CA264_21400at 144.259 kb on + strand, within CA264_21400at 144.260 kb on - strand, within CA264_21400at 144.260 kb on - strand, within CA264_21400at 144.268 kb on + strand, within CA264_21400at 144.284 kb on + strand, within CA264_21400at 144.337 kb on + strand, within CA264_21400at 144.428 kb on - strand, within CA264_21400at 144.471 kb on + strand, within CA264_21400at 144.473 kb on + strand, within CA264_21400at 144.473 kb on + strand, within CA264_21400at 144.473 kb on + strand, within CA264_21400at 144.474 kb on - strand, within CA264_21400at 144.493 kb on + strand, within CA264_21400at 144.493 kb on + strand, within CA264_21400at 144.559 kb on + strand, within CA264_21400at 144.577 kb on + strand, within CA264_21400at 144.615 kb on + strand, within CA264_21400at 144.616 kb on - strand, within CA264_21400at 144.640 kb on + strand, within CA264_21400at 144.640 kb on + strand, within CA264_21400at 144.641 kb on - strand, within CA264_21400at 144.685 kb on - strand, within CA264_21400at 144.693 kb on + strand, within CA264_21400at 144.727 kb on + strand, within CA264_21400at 144.728 kb on - strand, within CA264_21400at 144.736 kb on + strand, within CA264_21400at 144.737 kb on - strand, within CA264_21400at 144.783 kb on + strand, within CA264_21400at 144.784 kb on - strand, within CA264_21400at 144.784 kb on - strand, within CA264_21400at 144.826 kb on + strand, within CA264_21400at 144.826 kb on + strand, within CA264_21400at 144.841 kb on + strand, within CA264_21400at 144.842 kb on - strand, within CA264_21400at 144.842 kb on - strand, within CA264_21400at 144.873 kb on + strand, within CA264_21400at 144.873 kb on + strand, within CA264_21400at 144.874 kb on - strand, within CA264_21400at 144.886 kb on + strand, within CA264_21400at 144.914 kb on + strand, within CA264_21400at 144.917 kb on - strand, within CA264_21400at 144.917 kb on - strand, within CA264_21400at 144.917 kb on - strand, within CA264_21400at 144.920 kb on + strand, within CA264_21400at 144.920 kb on + strand, within CA264_21400at 144.921 kb on - strand, within CA264_21400at 144.998 kb on + strand, within CA264_21400at 145.001 kb on + strand, within CA264_21400at 145.002 kb on - strand, within CA264_21400at 145.042 kb on + strand, within CA264_21400at 145.042 kb on + strand, within CA264_21400at 145.042 kb on + strand, within CA264_21400at 145.058 kb on + strand, within CA264_21400at 145.094 kb on + strand, within CA264_21400at 145.095 kb on - strand, within CA264_21400at 145.109 kb on - strandat 145.115 kb on - strandat 145.115 kb on - strandat 145.115 kb on - strandat 145.191 kb on - strandat 145.199 kb on + strandat 145.200 kb on - strandat 145.214 kb on - strandat 145.255 kb on + strandat 145.276 kb on + strandat 145.357 kb on + strandat 145.358 kb on - strandat 145.364 kb on - strandat 145.374 kb on + strandat 146.209 kb on + strandat 146.209 kb on + strandat 146.210 kb on - strandat 146.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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142,612 + CA264_21395 0.58 -1.2
142,717 + CA264_21395 0.70 -1.3
142,752 - CA264_21395 0.74 -1.1
142,752 - CA264_21395 0.74 -0.6
142,777 + CA264_21395 0.77 -0.5
142,778 - CA264_21395 0.78 +0.2
142,778 - CA264_21395 0.78 -0.3
142,782 + CA264_21395 0.78 -1.3
142,782 + CA264_21395 0.78 -1.0
142,789 + CA264_21395 0.79 -1.1
142,852 + CA264_21395 0.86 -0.4
142,852 + CA264_21395 0.86 -1.2
142,853 - CA264_21395 0.86 +1.0
142,937 - +1.4
142,957 - -0.0
142,959 + -3.3
142,972 + -0.8
142,976 - +0.7
143,038 + -1.1
143,098 + +1.1
143,098 + +0.2
143,101 + -0.6
143,101 + -0.4
143,137 + -2.6
143,217 + -0.9
143,218 - +2.0
143,353 - -0.3
143,437 + +0.6
143,439 + -1.1
143,439 + -0.9
143,507 + +0.5
143,507 + -0.7
143,509 + +0.2
143,517 + +1.7
143,518 - -0.2
143,518 - -0.4
143,614 - +0.9
143,614 - +2.6
143,614 - +0.7
143,614 - +0.2
143,622 - +0.0
143,654 + CA264_21400 0.11 +0.7
143,661 - CA264_21400 0.12 -0.3
143,724 - CA264_21400 0.15 +1.4
143,739 + CA264_21400 0.16 -2.1
143,769 + CA264_21400 0.17 -0.8
143,770 - CA264_21400 0.17 +1.0
143,770 - CA264_21400 0.17 -0.4
143,826 + CA264_21400 0.20 +0.6
143,840 + CA264_21400 0.21 +0.1
143,841 - CA264_21400 0.21 -1.5
143,841 - CA264_21400 0.21 +0.9
143,846 - CA264_21400 0.22 -2.1
143,850 - CA264_21400 0.22 -0.1
143,861 - CA264_21400 0.22 -2.2
143,979 - CA264_21400 0.29 -0.0
144,036 + CA264_21400 0.32 -1.8
144,037 - CA264_21400 0.32 +0.3
144,041 - CA264_21400 0.32 -0.2
144,041 - CA264_21400 0.32 +0.2
144,080 - CA264_21400 0.34 -2.2
144,080 - CA264_21400 0.34 -0.9
144,090 - CA264_21400 0.35 -0.3
144,093 + CA264_21400 0.35 -0.2
144,093 + CA264_21400 0.35 -0.6
144,093 + CA264_21400 0.35 -1.0
144,094 - CA264_21400 0.35 +0.4
144,094 - CA264_21400 0.35 -0.2
144,094 - CA264_21400 0.35 +0.0
144,103 + CA264_21400 0.36 +0.2
144,103 + CA264_21400 0.36 +2.2
144,104 - CA264_21400 0.36 -0.3
144,104 - CA264_21400 0.36 +0.6
144,104 - CA264_21400 0.36 -0.0
144,111 - CA264_21400 0.36 +1.0
144,111 - CA264_21400 0.36 -0.4
144,113 + CA264_21400 0.36 -0.9
144,114 - CA264_21400 0.36 -1.1
144,129 + CA264_21400 0.37 -1.9
144,141 - CA264_21400 0.38 +0.5
144,193 - CA264_21400 0.40 -0.9
144,198 - CA264_21400 0.41 -0.2
144,250 - CA264_21400 0.43 -0.3
144,250 - CA264_21400 0.43 -0.1
144,253 + CA264_21400 0.44 -2.8
144,253 + CA264_21400 0.44 -1.1
144,254 - CA264_21400 0.44 -0.6
144,254 - CA264_21400 0.44 +0.2
144,254 - CA264_21400 0.44 -1.0
144,259 + CA264_21400 0.44 -1.1
144,260 - CA264_21400 0.44 -1.0
144,260 - CA264_21400 0.44 -0.5
144,268 + CA264_21400 0.44 -0.4
144,284 + CA264_21400 0.45 -0.4
144,337 + CA264_21400 0.48 +0.2
144,428 - CA264_21400 0.53 +2.6
144,471 + CA264_21400 0.55 +0.5
144,473 + CA264_21400 0.56 -1.4
144,473 + CA264_21400 0.56 +0.0
144,473 + CA264_21400 0.56 -1.2
144,474 - CA264_21400 0.56 -0.6
144,493 + CA264_21400 0.57 +1.1
144,493 + CA264_21400 0.57 -0.9
144,559 + CA264_21400 0.60 +1.1
144,577 + CA264_21400 0.61 -0.1
144,615 + CA264_21400 0.63 -1.8
144,616 - CA264_21400 0.63 +1.0
144,640 + CA264_21400 0.65 -1.4
144,640 + CA264_21400 0.65 -0.5
144,641 - CA264_21400 0.65 -0.5
144,685 - CA264_21400 0.67 -0.7
144,693 + CA264_21400 0.67 -1.1
144,727 + CA264_21400 0.69 -0.3
144,728 - CA264_21400 0.69 -1.0
144,736 + CA264_21400 0.70 -2.1
144,737 - CA264_21400 0.70 -0.6
144,783 + CA264_21400 0.72 -0.6
144,784 - CA264_21400 0.72 +0.7
144,784 - CA264_21400 0.72 -0.5
144,826 + CA264_21400 0.75 -0.6
144,826 + CA264_21400 0.75 -0.9
144,841 + CA264_21400 0.76 -0.3
144,842 - CA264_21400 0.76 +0.4
144,842 - CA264_21400 0.76 -0.6
144,873 + CA264_21400 0.77 -1.0
144,873 + CA264_21400 0.77 +2.3
144,874 - CA264_21400 0.77 +1.1
144,886 + CA264_21400 0.78 +0.7
144,914 + CA264_21400 0.79 -0.3
144,917 - CA264_21400 0.80 +0.6
144,917 - CA264_21400 0.80 -0.2
144,917 - CA264_21400 0.80 -0.0
144,920 + CA264_21400 0.80 -0.8
144,920 + CA264_21400 0.80 +0.8
144,921 - CA264_21400 0.80 -0.4
144,998 + CA264_21400 0.84 -0.8
145,001 + CA264_21400 0.84 -0.6
145,002 - CA264_21400 0.84 +0.1
145,042 + CA264_21400 0.86 +0.1
145,042 + CA264_21400 0.86 -0.9
145,042 + CA264_21400 0.86 -2.5
145,058 + CA264_21400 0.87 -1.3
145,094 + CA264_21400 0.89 -1.2
145,095 - CA264_21400 0.89 -0.4
145,109 - -0.8
145,115 - +0.2
145,115 - -0.5
145,115 - -0.7
145,191 - -0.9
145,199 + +0.1
145,200 - -0.6
145,214 - -0.2
145,255 + -0.6
145,276 + -0.0
145,357 + -1.5
145,358 - -0.1
145,364 - -0.6
145,374 + -1.6
146,209 + +0.9
146,209 + -0.0
146,210 - +0.1
146,210 - +1.6

Or see this region's nucleotide sequence