Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20990

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20975 and CA264_20980 are separated by 24 nucleotidesCA264_20980 and CA264_20985 are separated by 3 nucleotidesCA264_20985 and CA264_20990 are separated by 48 nucleotidesCA264_20990 and CA264_20995 overlap by 26 nucleotidesCA264_20995 and CA264_21000 are separated by 39 nucleotides CA264_20975: CA264_20975 - hypothetical protein, at 58,388 to 58,798 _20975 CA264_20980: CA264_20980 - conjugal transfer protein, at 58,823 to 59,116 _20980 CA264_20985: CA264_20985 - DUF4133 domain-containing protein, at 59,120 to 59,422 _20985 CA264_20990: CA264_20990 - conjugal transfer protein TraG, at 59,471 to 61,915 _20990 CA264_20995: CA264_20995 - plasmid transfer protein, at 61,890 to 62,561 _20995 CA264_21000: CA264_21000 - hypothetical protein, at 62,601 to 63,200 _21000 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.537 kb on + strand, within CA264_20975at 58.576 kb on - strand, within CA264_20975at 58.607 kb on + strand, within CA264_20975at 58.702 kb on + strand, within CA264_20975at 58.703 kb on - strand, within CA264_20975at 58.733 kb on - strand, within CA264_20975at 58.735 kb on - strand, within CA264_20975at 58.783 kb on - strandat 58.822 kb on + strandat 58.834 kb on - strandat 58.840 kb on + strandat 58.841 kb on - strandat 58.841 kb on - strandat 58.950 kb on + strand, within CA264_20980at 58.950 kb on + strand, within CA264_20980at 59.000 kb on + strand, within CA264_20980at 59.000 kb on + strand, within CA264_20980at 59.001 kb on - strand, within CA264_20980at 59.114 kb on + strandat 59.135 kb on - strandat 59.147 kb on - strandat 59.147 kb on - strandat 59.147 kb on - strandat 59.197 kb on + strand, within CA264_20985at 59.198 kb on - strand, within CA264_20985at 59.201 kb on + strand, within CA264_20985at 59.201 kb on + strand, within CA264_20985at 59.202 kb on - strand, within CA264_20985at 59.202 kb on - strand, within CA264_20985at 59.202 kb on - strand, within CA264_20985at 59.203 kb on + strand, within CA264_20985at 59.204 kb on - strand, within CA264_20985at 59.204 kb on - strand, within CA264_20985at 59.207 kb on + strand, within CA264_20985at 59.208 kb on - strand, within CA264_20985at 59.208 kb on - strand, within CA264_20985at 59.326 kb on + strand, within CA264_20985at 59.381 kb on + strand, within CA264_20985at 59.381 kb on + strand, within CA264_20985at 59.421 kb on - strandat 59.498 kb on + strandat 59.498 kb on + strandat 59.499 kb on - strandat 59.499 kb on - strandat 59.528 kb on - strandat 59.532 kb on + strandat 59.532 kb on + strandat 59.532 kb on + strandat 59.532 kb on + strandat 59.534 kb on + strandat 59.534 kb on + strandat 59.612 kb on + strandat 59.613 kb on - strandat 59.666 kb on + strandat 59.667 kb on - strandat 59.667 kb on - strandat 59.667 kb on - strandat 59.669 kb on - strandat 59.688 kb on + strandat 59.688 kb on + strandat 59.688 kb on + strandat 59.689 kb on - strandat 59.689 kb on - strandat 59.689 kb on - strandat 59.689 kb on - strandat 59.776 kb on - strand, within CA264_20990at 59.776 kb on - strand, within CA264_20990at 59.785 kb on + strand, within CA264_20990at 59.785 kb on + strand, within CA264_20990at 59.798 kb on - strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.831 kb on - strand, within CA264_20990at 59.834 kb on + strand, within CA264_20990at 59.835 kb on - strand, within CA264_20990at 59.915 kb on + strand, within CA264_20990at 59.916 kb on - strand, within CA264_20990at 59.948 kb on - strand, within CA264_20990at 59.987 kb on + strand, within CA264_20990at 60.069 kb on + strand, within CA264_20990at 60.070 kb on - strand, within CA264_20990at 60.070 kb on - strand, within CA264_20990at 60.098 kb on - strand, within CA264_20990at 60.098 kb on - strand, within CA264_20990at 60.125 kb on + strand, within CA264_20990at 60.189 kb on - strand, within CA264_20990at 60.237 kb on + strand, within CA264_20990at 60.238 kb on - strand, within CA264_20990at 60.302 kb on - strand, within CA264_20990at 60.351 kb on - strand, within CA264_20990at 60.359 kb on + strand, within CA264_20990at 60.393 kb on + strand, within CA264_20990at 60.394 kb on - strand, within CA264_20990at 60.395 kb on + strand, within CA264_20990at 60.395 kb on + strand, within CA264_20990at 60.396 kb on - strand, within CA264_20990at 60.396 kb on - strand, within CA264_20990at 60.406 kb on + strand, within CA264_20990at 60.410 kb on + strand, within CA264_20990at 60.440 kb on - strand, within CA264_20990at 60.461 kb on + strand, within CA264_20990at 60.463 kb on + strand, within CA264_20990at 60.464 kb on - strand, within CA264_20990at 60.514 kb on + strand, within CA264_20990at 60.519 kb on + strand, within CA264_20990at 60.521 kb on + strand, within CA264_20990at 60.521 kb on + strand, within CA264_20990at 60.522 kb on - strand, within CA264_20990at 60.527 kb on - strand, within CA264_20990at 60.555 kb on + strand, within CA264_20990at 60.555 kb on + strand, within CA264_20990at 60.555 kb on + strand, within CA264_20990at 60.610 kb on - strand, within CA264_20990at 60.611 kb on + strand, within CA264_20990at 60.611 kb on + strand, within CA264_20990at 60.612 kb on - strand, within CA264_20990at 60.692 kb on - strand, within CA264_20990at 60.759 kb on - strand, within CA264_20990at 60.759 kb on - strand, within CA264_20990at 60.782 kb on - strand, within CA264_20990at 60.825 kb on - strand, within CA264_20990at 60.839 kb on + strand, within CA264_20990at 60.839 kb on + strand, within CA264_20990at 60.844 kb on + strand, within CA264_20990at 61.016 kb on + strand, within CA264_20990at 61.017 kb on - strand, within CA264_20990at 61.017 kb on - strand, within CA264_20990at 61.017 kb on - strand, within CA264_20990at 61.026 kb on - strand, within CA264_20990at 61.055 kb on + strand, within CA264_20990at 61.076 kb on + strand, within CA264_20990at 61.127 kb on - strand, within CA264_20990at 61.184 kb on + strand, within CA264_20990at 61.184 kb on + strand, within CA264_20990at 61.210 kb on - strand, within CA264_20990at 61.213 kb on + strand, within CA264_20990at 61.214 kb on - strand, within CA264_20990at 61.237 kb on + strand, within CA264_20990at 61.238 kb on - strand, within CA264_20990at 61.270 kb on + strand, within CA264_20990at 61.271 kb on - strand, within CA264_20990at 61.403 kb on + strand, within CA264_20990at 61.405 kb on + strand, within CA264_20990at 61.405 kb on + strand, within CA264_20990at 61.412 kb on + strand, within CA264_20990at 61.421 kb on - strand, within CA264_20990at 61.421 kb on - strand, within CA264_20990at 61.421 kb on - strand, within CA264_20990at 61.673 kb on + strandat 61.674 kb on - strandat 61.704 kb on - strandat 61.777 kb on - strandat 61.777 kb on - strandat 61.777 kb on - strandat 61.854 kb on + strandat 61.855 kb on - strandat 61.913 kb on + strandat 61.914 kb on - strandat 61.942 kb on + strandat 61.942 kb on + strandat 61.946 kb on - strandat 62.031 kb on - strand, within CA264_20995at 62.066 kb on + strand, within CA264_20995at 62.067 kb on - strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.070 kb on - strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.170 kb on - strand, within CA264_20995at 62.194 kb on + strand, within CA264_20995at 62.194 kb on + strand, within CA264_20995at 62.195 kb on - strand, within CA264_20995at 62.195 kb on - strand, within CA264_20995at 62.202 kb on + strand, within CA264_20995at 62.288 kb on + strand, within CA264_20995at 62.303 kb on + strand, within CA264_20995at 62.304 kb on - strand, within CA264_20995at 62.307 kb on + strandat 62.308 kb on - strand, within CA264_20995at 62.308 kb on - strand, within CA264_20995at 62.422 kb on - strand, within CA264_20995at 62.542 kb on - strandat 62.542 kb on - strandat 62.564 kb on + strandat 62.576 kb on + strandat 62.588 kb on - strandat 62.588 kb on - strandat 62.593 kb on + strandat 62.623 kb on + strandat 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.742 kb on - strand, within CA264_21000at 62.760 kb on + strand, within CA264_21000at 62.784 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.861 kb on - strand, within CA264_21000at 62.869 kb on + strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.871 kb on + strand, within CA264_21000

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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58,537 + CA264_20975 0.36 +0.8
58,576 - CA264_20975 0.46 -0.1
58,607 + CA264_20975 0.53 -1.4
58,702 + CA264_20975 0.76 +0.3
58,703 - CA264_20975 0.77 -0.4
58,733 - CA264_20975 0.84 -0.3
58,735 - CA264_20975 0.84 +0.3
58,783 - -0.0
58,822 + -0.0
58,834 - -0.9
58,840 + -0.2
58,841 - +0.0
58,841 - -0.6
58,950 + CA264_20980 0.43 +0.0
58,950 + CA264_20980 0.43 +0.7
59,000 + CA264_20980 0.60 +2.0
59,000 + CA264_20980 0.60 +0.4
59,001 - CA264_20980 0.61 -1.1
59,114 + -1.3
59,135 - -0.0
59,147 - -0.2
59,147 - -0.5
59,147 - -0.7
59,197 + CA264_20985 0.25 -2.3
59,198 - CA264_20985 0.26 -0.8
59,201 + CA264_20985 0.27 -0.9
59,201 + CA264_20985 0.27 +0.1
59,202 - CA264_20985 0.27 -0.3
59,202 - CA264_20985 0.27 +0.7
59,202 - CA264_20985 0.27 +0.1
59,203 + CA264_20985 0.27 +0.5
59,204 - CA264_20985 0.28 +0.4
59,204 - CA264_20985 0.28 -1.1
59,207 + CA264_20985 0.29 +0.6
59,208 - CA264_20985 0.29 -0.2
59,208 - CA264_20985 0.29 +0.1
59,326 + CA264_20985 0.68 +0.0
59,381 + CA264_20985 0.86 -0.4
59,381 + CA264_20985 0.86 -0.4
59,421 - -0.6
59,498 + -0.8
59,498 + -0.4
59,499 - -1.4
59,499 - -0.4
59,528 - -0.3
59,532 + +0.3
59,532 + -2.6
59,532 + -0.4
59,532 + -0.7
59,534 + +1.6
59,534 + +0.5
59,612 + +0.6
59,613 - +0.6
59,666 + -0.5
59,667 - -0.6
59,667 - +0.2
59,667 - -0.6
59,669 - +0.5
59,688 + +0.3
59,688 + +0.1
59,688 + +0.2
59,689 - -0.8
59,689 - -0.8
59,689 - -0.2
59,689 - -0.2
59,776 - CA264_20990 0.12 -0.1
59,776 - CA264_20990 0.12 -0.5
59,785 + CA264_20990 0.13 -0.6
59,785 + CA264_20990 0.13 -1.0
59,798 - CA264_20990 0.13 -0.9
59,830 + CA264_20990 0.15 -1.4
59,830 + CA264_20990 0.15 +1.7
59,830 + CA264_20990 0.15 -0.0
59,830 + CA264_20990 0.15 -0.4
59,830 + CA264_20990 0.15 -1.5
59,830 + CA264_20990 0.15 -0.3
59,831 - CA264_20990 0.15 +0.7
59,834 + CA264_20990 0.15 +0.1
59,835 - CA264_20990 0.15 -0.0
59,915 + CA264_20990 0.18 +0.1
59,916 - CA264_20990 0.18 +1.0
59,948 - CA264_20990 0.20 +0.1
59,987 + CA264_20990 0.21 +0.2
60,069 + CA264_20990 0.24 -0.8
60,070 - CA264_20990 0.24 -0.1
60,070 - CA264_20990 0.24 -0.3
60,098 - CA264_20990 0.26 +1.0
60,098 - CA264_20990 0.26 -0.3
60,125 + CA264_20990 0.27 +1.8
60,189 - CA264_20990 0.29 +1.0
60,237 + CA264_20990 0.31 +0.2
60,238 - CA264_20990 0.31 +0.3
60,302 - CA264_20990 0.34 -0.8
60,351 - CA264_20990 0.36 +0.4
60,359 + CA264_20990 0.36 -0.1
60,393 + CA264_20990 0.38 -0.0
60,394 - CA264_20990 0.38 -0.1
60,395 + CA264_20990 0.38 -0.3
60,395 + CA264_20990 0.38 +0.1
60,396 - CA264_20990 0.38 +0.8
60,396 - CA264_20990 0.38 -0.2
60,406 + CA264_20990 0.38 -0.2
60,410 + CA264_20990 0.38 +0.1
60,440 - CA264_20990 0.40 -1.2
60,461 + CA264_20990 0.40 -2.4
60,463 + CA264_20990 0.41 +0.0
60,464 - CA264_20990 0.41 -1.0
60,514 + CA264_20990 0.43 -0.8
60,519 + CA264_20990 0.43 -1.0
60,521 + CA264_20990 0.43 -0.2
60,521 + CA264_20990 0.43 -0.2
60,522 - CA264_20990 0.43 +0.0
60,527 - CA264_20990 0.43 -0.3
60,555 + CA264_20990 0.44 +0.3
60,555 + CA264_20990 0.44 -0.2
60,555 + CA264_20990 0.44 +0.1
60,610 - CA264_20990 0.47 -0.0
60,611 + CA264_20990 0.47 -1.6
60,611 + CA264_20990 0.47 +2.0
60,612 - CA264_20990 0.47 -0.1
60,692 - CA264_20990 0.50 -0.2
60,759 - CA264_20990 0.53 -1.2
60,759 - CA264_20990 0.53 -1.6
60,782 - CA264_20990 0.54 +0.1
60,825 - CA264_20990 0.55 +0.6
60,839 + CA264_20990 0.56 -0.4
60,839 + CA264_20990 0.56 +0.1
60,844 + CA264_20990 0.56 -0.4
61,016 + CA264_20990 0.63 +1.6
61,017 - CA264_20990 0.63 -0.5
61,017 - CA264_20990 0.63 -0.4
61,017 - CA264_20990 0.63 -0.9
61,026 - CA264_20990 0.64 -0.8
61,055 + CA264_20990 0.65 -0.3
61,076 + CA264_20990 0.66 -0.5
61,127 - CA264_20990 0.68 -0.3
61,184 + CA264_20990 0.70 +0.2
61,184 + CA264_20990 0.70 -0.5
61,210 - CA264_20990 0.71 -0.7
61,213 + CA264_20990 0.71 -0.5
61,214 - CA264_20990 0.71 -0.6
61,237 + CA264_20990 0.72 -0.0
61,238 - CA264_20990 0.72 +0.1
61,270 + CA264_20990 0.74 -0.6
61,271 - CA264_20990 0.74 +0.2
61,403 + CA264_20990 0.79 -1.1
61,405 + CA264_20990 0.79 -0.6
61,405 + CA264_20990 0.79 +0.7
61,412 + CA264_20990 0.79 -0.0
61,421 - CA264_20990 0.80 -1.1
61,421 - CA264_20990 0.80 -0.5
61,421 - CA264_20990 0.80 +0.4
61,673 + -0.4
61,674 - +0.2
61,704 - -0.0
61,777 - -0.1
61,777 - -0.6
61,777 - -0.5
61,854 + -0.0
61,855 - -0.1
61,913 + -0.0
61,914 - +0.4
61,942 + -0.4
61,942 + +0.3
61,946 - -0.7
62,031 - CA264_20995 0.21 +0.6
62,066 + CA264_20995 0.26 -0.1
62,067 - CA264_20995 0.26 +0.2
62,069 + CA264_20995 0.27 -0.4
62,069 + CA264_20995 0.27 -0.4
62,069 + CA264_20995 0.27 -0.6
62,070 - CA264_20995 0.27 -0.3
62,169 + CA264_20995 0.42 +2.1
62,169 + CA264_20995 0.42 -0.2
62,169 + CA264_20995 0.42 -1.3
62,170 - CA264_20995 0.42 -3.0
62,194 + CA264_20995 0.45 -1.7
62,194 + CA264_20995 0.45 +0.8
62,195 - CA264_20995 0.45 -0.4
62,195 - CA264_20995 0.45 -2.1
62,202 + CA264_20995 0.46 -0.3
62,288 + CA264_20995 0.59 +0.2
62,303 + CA264_20995 0.61 -0.8
62,304 - CA264_20995 0.62 -0.7
62,307 + +0.2
62,308 - CA264_20995 0.62 -0.3
62,308 - CA264_20995 0.62 +0.1
62,422 - CA264_20995 0.79 -0.2
62,542 - -0.4
62,542 - -0.0
62,564 + -0.3
62,576 + +0.4
62,588 - -0.8
62,588 - +0.1
62,593 + -0.6
62,623 + -0.8
62,683 - CA264_21000 0.14 -2.0
62,683 - CA264_21000 0.14 -0.3
62,683 - CA264_21000 0.14 +1.3
62,742 - CA264_21000 0.23 +0.8
62,760 + CA264_21000 0.27 -0.2
62,784 - CA264_21000 0.30 -0.4
62,805 - CA264_21000 0.34 -1.0
62,805 - CA264_21000 0.34 +0.8
62,861 - CA264_21000 0.43 +0.3
62,869 + CA264_21000 0.45 -1.2
62,870 - CA264_21000 0.45 +1.1
62,870 - CA264_21000 0.45 +0.8
62,871 + CA264_21000 0.45 -0.7

Or see this region's nucleotide sequence