Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20780 and CA264_20785 are separated by 243 nucleotides CA264_20785 and CA264_20790 are separated by 46 nucleotides
CA264_20780: CA264_20780 - alpha-glucan family phosphorylase, at 16,983 to 18,638
_20780
CA264_20785: CA264_20785 - hypothetical protein, at 18,882 to 19,229
_20785
CA264_20790: CA264_20790 - glyceraldehyde-3-phosphate dehydrogenase, at 19,276 to 20,313
_20790
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.885 kb on + strand, within CA264_20780 at 17.895 kb on + strand, within CA264_20780 at 17.895 kb on + strand, within CA264_20780 at 18.012 kb on + strand, within CA264_20780 at 18.046 kb on + strand, within CA264_20780 at 18.050 kb on + strand, within CA264_20780 at 18.050 kb on + strand, within CA264_20780 at 18.100 kb on + strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.102 kb on + strand, within CA264_20780 at 18.102 kb on + strand, within CA264_20780 at 18.103 kb on - strand, within CA264_20780 at 18.103 kb on - strand, within CA264_20780 at 18.137 kb on + strand, within CA264_20780 at 18.138 kb on - strand, within CA264_20780 at 18.156 kb on + strand, within CA264_20780 at 18.156 kb on + strand, within CA264_20780 at 18.157 kb on - strand, within CA264_20780 at 18.157 kb on - strand, within CA264_20780 at 18.162 kb on - strand, within CA264_20780 at 18.196 kb on + strand, within CA264_20780 at 18.197 kb on - strand, within CA264_20780 at 18.226 kb on + strand, within CA264_20780 at 18.227 kb on - strand, within CA264_20780 at 18.253 kb on - strand, within CA264_20780 at 18.295 kb on + strand, within CA264_20780 at 18.296 kb on - strand, within CA264_20780 at 18.298 kb on + strand, within CA264_20780 at 18.299 kb on - strand, within CA264_20780 at 18.328 kb on - strand, within CA264_20780 at 18.371 kb on - strand, within CA264_20780 at 18.372 kb on + strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.399 kb on - strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.446 kb on - strand, within CA264_20780 at 18.527 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.530 kb on - strand at 18.557 kb on - strand at 18.571 kb on + strand at 18.571 kb on + strand at 18.572 kb on - strand at 18.589 kb on + strand at 18.590 kb on - strand at 18.601 kb on + strand at 18.602 kb on - strand at 18.607 kb on + strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.615 kb on + strand at 18.616 kb on - strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.639 kb on - strand at 18.639 kb on - strand at 18.642 kb on + strand at 18.643 kb on - strand at 18.647 kb on + strand at 18.710 kb on + strand at 18.732 kb on + strand at 18.759 kb on - strand at 18.823 kb on + strand at 18.825 kb on + strand at 18.825 kb on + strand at 18.826 kb on - strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.864 kb on - strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.901 kb on - strand at 18.901 kb on - strand at 18.912 kb on + strand at 18.913 kb on - strand at 18.955 kb on - strand, within CA264_20785 at 18.973 kb on + strand, within CA264_20785 at 18.974 kb on - strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.162 kb on + strand, within CA264_20785 at 19.163 kb on - strand, within CA264_20785 at 19.164 kb on + strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.218 kb on - strand at 19.241 kb on + strand at 19.246 kb on + strand at 19.246 kb on + strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.282 kb on + strand at 19.283 kb on - strand at 19.421 kb on + strand, within CA264_20790 at 19.421 kb on + strand, within CA264_20790 at 19.422 kb on - strand, within CA264_20790 at 19.441 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.519 kb on + strand, within CA264_20790 at 19.691 kb on - strand, within CA264_20790 at 19.736 kb on - strand, within CA264_20790 at 19.758 kb on + strand, within CA264_20790 at 19.758 kb on + strand, within CA264_20790 at 19.759 kb on - strand, within CA264_20790 at 19.879 kb on - strand, within CA264_20790 at 20.021 kb on - strand at 20.036 kb on - strand, within CA264_20790 at 20.153 kb on + strand, within CA264_20790 at 20.163 kb on - strand, within CA264_20790 at 20.173 kb on + strand, within CA264_20790
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 17,885 + CA264_20780 0.54 +0.1 17,895 + CA264_20780 0.55 -0.1 17,895 + CA264_20780 0.55 -0.3 18,012 + CA264_20780 0.62 +0.6 18,046 + CA264_20780 0.64 -0.5 18,050 + CA264_20780 0.64 +0.5 18,050 + CA264_20780 0.64 -0.9 18,100 + CA264_20780 0.67 -0.1 18,101 - CA264_20780 0.68 +0.3 18,101 - CA264_20780 0.68 +0.7 18,101 - CA264_20780 0.68 -1.5 18,101 - CA264_20780 0.68 +1.2 18,102 + CA264_20780 0.68 -0.8 18,102 + CA264_20780 0.68 -0.5 18,103 - CA264_20780 0.68 +0.5 18,103 - CA264_20780 0.68 -0.4 18,137 + CA264_20780 0.70 -0.4 18,138 - CA264_20780 0.70 -1.3 18,156 + CA264_20780 0.71 -0.2 18,156 + CA264_20780 0.71 -0.3 18,157 - CA264_20780 0.71 +0.6 18,157 - CA264_20780 0.71 -1.0 18,162 - CA264_20780 0.71 -0.6 18,196 + CA264_20780 0.73 -1.3 18,197 - CA264_20780 0.73 -0.1 18,226 + CA264_20780 0.75 -0.3 18,227 - CA264_20780 0.75 -0.2 18,253 - CA264_20780 0.77 -0.2 18,295 + CA264_20780 0.79 -0.5 18,296 - CA264_20780 0.79 -0.5 18,298 + CA264_20780 0.79 -0.3 18,299 - CA264_20780 0.79 +0.1 18,328 - CA264_20780 0.81 -0.4 18,371 - CA264_20780 0.84 +0.7 18,372 + CA264_20780 0.84 -1.2 18,373 - CA264_20780 0.84 +0.2 18,373 - CA264_20780 0.84 -0.6 18,398 + CA264_20780 0.85 -0.1 18,398 + CA264_20780 0.85 -0.6 18,399 - CA264_20780 0.86 +0.2 18,413 + CA264_20780 0.86 +1.3 18,413 + CA264_20780 0.86 -0.5 18,413 + CA264_20780 0.86 -0.3 18,413 + CA264_20780 0.86 +0.1 18,427 + CA264_20780 0.87 -0.5 18,427 + CA264_20780 0.87 +1.8 18,427 + CA264_20780 0.87 -0.7 18,428 - CA264_20780 0.87 -0.1 18,428 - CA264_20780 0.87 -0.2 18,446 - CA264_20780 0.88 -0.1 18,527 + +0.7 18,529 + +1.0 18,529 + +0.4 18,530 - +0.6 18,557 - -0.6 18,571 + -0.4 18,571 + -0.1 18,572 - -0.3 18,589 + +0.0 18,590 - +1.7 18,601 + -1.3 18,602 - +0.3 18,607 + -0.4 18,608 - +0.3 18,608 - -0.6 18,608 - -1.1 18,608 - +0.1 18,615 + -0.4 18,616 - -1.1 18,638 + +1.1 18,638 + +1.7 18,638 + -0.7 18,638 + -0.1 18,639 - +0.2 18,639 - +1.6 18,642 + -0.7 18,643 - +0.1 18,647 + +1.1 18,710 + -1.5 18,732 + -0.3 18,759 - -0.8 18,823 + -0.0 18,825 + +0.8 18,825 + +0.1 18,826 - -1.4 18,863 + -0.2 18,863 + -0.0 18,863 + +1.6 18,863 + +0.2 18,864 - -0.2 18,900 + +0.1 18,900 + +0.7 18,900 + -0.7 18,900 + -0.2 18,901 - -0.6 18,901 - +0.1 18,912 + +0.2 18,913 - -0.8 18,955 - CA264_20785 0.21 +0.1 18,973 + CA264_20785 0.26 -0.2 18,974 - CA264_20785 0.26 -0.2 19,051 + CA264_20785 0.49 -0.6 19,051 + CA264_20785 0.49 +0.1 19,162 + CA264_20785 0.80 +0.0 19,163 - CA264_20785 0.81 +0.0 19,164 + CA264_20785 0.81 -1.1 19,165 - CA264_20785 0.81 +0.3 19,165 - CA264_20785 0.81 +0.3 19,166 + CA264_20785 0.82 +0.4 19,166 + CA264_20785 0.82 -0.2 19,218 - -0.0 19,241 + -0.1 19,246 + +0.2 19,246 + -0.6 19,247 - +0.3 19,247 - -0.3 19,247 - +0.2 19,282 + -0.3 19,283 - -0.3 19,421 + CA264_20790 0.14 -0.1 19,421 + CA264_20790 0.14 -1.6 19,422 - CA264_20790 0.14 -0.7 19,441 + CA264_20790 0.16 -2.5 19,475 + CA264_20790 0.19 -0.3 19,475 + CA264_20790 0.19 -0.2 19,476 - CA264_20790 0.19 -0.2 19,476 - CA264_20790 0.19 -0.9 19,519 + CA264_20790 0.23 -1.0 19,691 - CA264_20790 0.40 +0.1 19,736 - CA264_20790 0.44 +0.7 19,758 + CA264_20790 0.46 +0.2 19,758 + CA264_20790 0.46 +0.1 19,759 - CA264_20790 0.47 -0.3 19,879 - CA264_20790 0.58 -1.3 20,021 - +0.7 20,036 - CA264_20790 0.73 +0.6 20,153 + CA264_20790 0.84 -0.2 20,163 - CA264_20790 0.85 -0.8 20,173 + CA264_20790 0.86 -0.5
Or see this region's nucleotide sequence