Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19545

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19540 and CA264_19545 are separated by 103 nucleotidesCA264_19545 and CA264_19550 are separated by 106 nucleotidesCA264_19550 and CA264_19555 are separated by 70 nucleotides CA264_19540: CA264_19540 - hypothetical protein, at 4,514,287 to 4,515,126 _19540 CA264_19545: CA264_19545 - oxidoreductase, at 4,515,230 to 4,516,123 _19545 CA264_19550: CA264_19550 - diaminopimelate epimerase, at 4,516,230 to 4,517,015 _19550 CA264_19555: CA264_19555 - GNAT family N-acetyltransferase, at 4,517,086 to 4,517,601 _19555 Position (kb) 4515 4516 4517Strain fitness (log2 ratio) -2 -1 0 1 2at 4514.244 kb on + strandat 4514.284 kb on + strandat 4514.288 kb on + strandat 4514.315 kb on + strandat 4514.345 kb on + strandat 4514.451 kb on + strand, within CA264_19540at 4514.533 kb on - strand, within CA264_19540at 4514.534 kb on + strand, within CA264_19540at 4514.535 kb on - strand, within CA264_19540at 4514.593 kb on + strand, within CA264_19540at 4514.645 kb on - strand, within CA264_19540at 4514.648 kb on + strand, within CA264_19540at 4514.648 kb on + strand, within CA264_19540at 4514.649 kb on - strand, within CA264_19540at 4514.652 kb on + strand, within CA264_19540at 4514.652 kb on + strand, within CA264_19540at 4514.653 kb on - strand, within CA264_19540at 4514.653 kb on - strand, within CA264_19540at 4514.681 kb on + strand, within CA264_19540at 4514.701 kb on + strand, within CA264_19540at 4514.816 kb on + strand, within CA264_19540at 4514.816 kb on + strand, within CA264_19540at 4514.816 kb on + strand, within CA264_19540at 4514.817 kb on - strand, within CA264_19540at 4514.873 kb on - strand, within CA264_19540at 4514.925 kb on + strand, within CA264_19540at 4514.956 kb on - strand, within CA264_19540at 4514.964 kb on + strand, within CA264_19540at 4514.964 kb on + strand, within CA264_19540at 4514.964 kb on + strand, within CA264_19540at 4514.965 kb on - strand, within CA264_19540at 4514.976 kb on + strand, within CA264_19540at 4514.977 kb on - strand, within CA264_19540at 4515.001 kb on - strand, within CA264_19540at 4515.001 kb on - strand, within CA264_19540at 4515.003 kb on + strand, within CA264_19540at 4515.004 kb on - strand, within CA264_19540at 4515.012 kb on + strand, within CA264_19540at 4515.013 kb on - strand, within CA264_19540at 4515.056 kb on + strandat 4515.057 kb on - strandat 4515.075 kb on + strandat 4515.147 kb on + strandat 4515.148 kb on - strandat 4515.155 kb on + strandat 4515.165 kb on + strandat 4515.165 kb on + strandat 4515.172 kb on - strandat 4515.204 kb on + strandat 4515.213 kb on - strandat 4515.231 kb on + strandat 4515.231 kb on + strandat 4515.248 kb on - strandat 4515.301 kb on - strandat 4515.399 kb on - strand, within CA264_19545at 4515.505 kb on - strand, within CA264_19545at 4515.534 kb on + strand, within CA264_19545at 4515.551 kb on + strand, within CA264_19545at 4515.568 kb on - strand, within CA264_19545at 4515.671 kb on + strand, within CA264_19545at 4515.715 kb on + strand, within CA264_19545at 4515.774 kb on + strand, within CA264_19545at 4515.778 kb on + strand, within CA264_19545at 4515.779 kb on - strand, within CA264_19545at 4515.824 kb on - strand, within CA264_19545at 4515.868 kb on - strand, within CA264_19545at 4515.868 kb on - strand, within CA264_19545at 4515.868 kb on - strand, within CA264_19545at 4515.868 kb on - strand, within CA264_19545at 4515.868 kb on - strand, within CA264_19545at 4515.873 kb on + strand, within CA264_19545at 4516.032 kb on + strand, within CA264_19545at 4516.033 kb on - strand, within CA264_19545at 4516.035 kb on + strandat 4516.036 kb on - strandat 4516.119 kb on + strandat 4516.119 kb on + strandat 4516.120 kb on - strandat 4516.123 kb on + strandat 4516.124 kb on - strandat 4516.124 kb on - strandat 4516.148 kb on - strandat 4516.148 kb on - strandat 4516.191 kb on - strandat 4516.214 kb on + strandat 4516.215 kb on - strandat 4516.227 kb on + strandat 4516.228 kb on - strandat 4516.228 kb on - strandat 4516.228 kb on - strandat 4516.228 kb on - strandat 4517.014 kb on - strandat 4517.107 kb on - strandat 4517.110 kb on + strandat 4517.111 kb on - strandat 4517.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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4,514,244 + -1.6
4,514,284 + +0.0
4,514,288 + -0.3
4,514,315 + -0.3
4,514,345 + -0.5
4,514,451 + CA264_19540 0.20 -0.0
4,514,533 - CA264_19540 0.29 -0.5
4,514,534 + CA264_19540 0.29 +1.4
4,514,535 - CA264_19540 0.30 +0.2
4,514,593 + CA264_19540 0.36 -0.1
4,514,645 - CA264_19540 0.43 +0.1
4,514,648 + CA264_19540 0.43 -0.2
4,514,648 + CA264_19540 0.43 +0.5
4,514,649 - CA264_19540 0.43 +0.8
4,514,652 + CA264_19540 0.43 -0.2
4,514,652 + CA264_19540 0.43 +0.1
4,514,653 - CA264_19540 0.44 +0.3
4,514,653 - CA264_19540 0.44 +1.8
4,514,681 + CA264_19540 0.47 -0.9
4,514,701 + CA264_19540 0.49 +0.0
4,514,816 + CA264_19540 0.63 +0.4
4,514,816 + CA264_19540 0.63 -0.7
4,514,816 + CA264_19540 0.63 -0.1
4,514,817 - CA264_19540 0.63 +0.2
4,514,873 - CA264_19540 0.70 -0.1
4,514,925 + CA264_19540 0.76 -0.1
4,514,956 - CA264_19540 0.80 +0.0
4,514,964 + CA264_19540 0.81 +0.6
4,514,964 + CA264_19540 0.81 -0.4
4,514,964 + CA264_19540 0.81 +0.2
4,514,965 - CA264_19540 0.81 -1.4
4,514,976 + CA264_19540 0.82 -1.2
4,514,977 - CA264_19540 0.82 -0.8
4,515,001 - CA264_19540 0.85 +0.2
4,515,001 - CA264_19540 0.85 -0.3
4,515,003 + CA264_19540 0.85 +0.1
4,515,004 - CA264_19540 0.85 -0.1
4,515,012 + CA264_19540 0.86 -2.3
4,515,013 - CA264_19540 0.86 -1.6
4,515,056 + -1.0
4,515,057 - +1.3
4,515,075 + -0.4
4,515,147 + +0.2
4,515,148 - -0.5
4,515,155 + -0.5
4,515,165 + +0.6
4,515,165 + -0.4
4,515,172 - +0.0
4,515,204 + -0.3
4,515,213 - +0.0
4,515,231 + -0.0
4,515,231 + -0.0
4,515,248 - +0.6
4,515,301 - +1.0
4,515,399 - CA264_19545 0.19 -1.2
4,515,505 - CA264_19545 0.31 +0.3
4,515,534 + CA264_19545 0.34 -0.7
4,515,551 + CA264_19545 0.36 +0.5
4,515,568 - CA264_19545 0.38 +0.1
4,515,671 + CA264_19545 0.49 +1.1
4,515,715 + CA264_19545 0.54 +1.3
4,515,774 + CA264_19545 0.61 +0.6
4,515,778 + CA264_19545 0.61 +1.5
4,515,779 - CA264_19545 0.61 +0.1
4,515,824 - CA264_19545 0.66 +0.5
4,515,868 - CA264_19545 0.71 +1.2
4,515,868 - CA264_19545 0.71 +0.1
4,515,868 - CA264_19545 0.71 +1.7
4,515,868 - CA264_19545 0.71 -0.9
4,515,868 - CA264_19545 0.71 +0.4
4,515,873 + CA264_19545 0.72 +0.7
4,516,032 + CA264_19545 0.90 +2.0
4,516,033 - CA264_19545 0.90 +0.1
4,516,035 + +0.6
4,516,036 - +0.6
4,516,119 + -0.2
4,516,119 + +1.3
4,516,120 - +0.2
4,516,123 + +1.0
4,516,124 - -0.2
4,516,124 - +0.2
4,516,148 - +0.1
4,516,148 - +0.9
4,516,191 - +0.6
4,516,214 + +0.4
4,516,215 - +1.3
4,516,227 + +0.1
4,516,228 - -2.3
4,516,228 - -0.6
4,516,228 - -0.1
4,516,228 - +0.2
4,517,014 - -0.9
4,517,107 - -1.7
4,517,110 + -0.7
4,517,111 - -1.2
4,517,111 - -1.2

Or see this region's nucleotide sequence