Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19235

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19225 and CA264_19230 overlap by 4 nucleotidesCA264_19230 and CA264_19235 are separated by 141 nucleotidesCA264_19235 and CA264_19240 are separated by 52 nucleotidesCA264_19240 and CA264_19245 are separated by 80 nucleotides CA264_19225: CA264_19225 - guanylate kinase, at 4,465,315 to 4,465,899 _19225 CA264_19230: CA264_19230 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 4,465,896 to 4,466,468 _19230 CA264_19235: CA264_19235 - ribosome-recycling factor, at 4,466,610 to 4,467,173 _19235 CA264_19240: CA264_19240 - UMP kinase, at 4,467,226 to 4,468,002 _19240 CA264_19245: CA264_19245 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 4,468,083 to 4,468,583 _19245 Position (kb) 4466 4467 4468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4466.493 kb on + strandat 4466.515 kb on + strandat 4466.516 kb on - strandat 4466.516 kb on - strandat 4466.521 kb on - strandat 4466.579 kb on + strandat 4466.579 kb on + strandat 4466.603 kb on + strandat 4466.611 kb on + strandat 4467.185 kb on + strandat 4467.186 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.173 kb on - strand, within CA264_19245at 4468.173 kb on - strand, within CA264_19245

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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4,466,493 + +0.5
4,466,515 + +0.1
4,466,516 - +2.0
4,466,516 - +1.4
4,466,521 - +1.9
4,466,579 + -0.9
4,466,579 + -2.5
4,466,603 + -3.3
4,466,611 + -3.6
4,467,185 + -1.4
4,467,186 - -0.3
4,468,081 - -1.7
4,468,081 - -2.3
4,468,081 - -3.5
4,468,081 - -1.8
4,468,081 - +0.0
4,468,081 - -0.3
4,468,173 - CA264_19245 0.18 +1.2
4,468,173 - CA264_19245 0.18 -1.6

Or see this region's nucleotide sequence