Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18410 and CA264_18415 are separated by 246 nucleotides CA264_18415 and CA264_18420 are separated by 421 nucleotides CA264_18420 and CA264_18425 are separated by 173 nucleotides
CA264_18410: CA264_18410 - glycine dehydrogenase (aminomethyl-transferring), at 4,280,934 to 4,283,852
_18410
CA264_18415: CA264_18415 - alanine dehydrogenase, at 4,284,099 to 4,285,343
_18415
CA264_18420: CA264_18420 - hypothetical protein, at 4,285,765 to 4,286,028
_18420
CA264_18425: CA264_18425 - 16S ribosomal RNA, at 4,286,202 to 4,287,722
_18425
Position (kb)
4284
4285
4286 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4283.165 kb on + strand, within CA264_18410 at 4283.569 kb on - strand at 4283.619 kb on - strand at 4283.862 kb on - strand at 4283.862 kb on - strand at 4283.864 kb on - strand at 4283.864 kb on - strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.866 kb on + strand at 4283.867 kb on - strand at 4283.867 kb on - strand at 4283.867 kb on - strand at 4283.915 kb on + strand at 4283.939 kb on + strand at 4283.942 kb on + strand at 4283.945 kb on + strand at 4283.950 kb on + strand at 4283.951 kb on - strand at 4283.953 kb on + strand at 4283.953 kb on + strand at 4283.955 kb on + strand at 4283.955 kb on + strand at 4283.997 kb on + strand at 4284.060 kb on - strand at 4284.092 kb on + strand at 4284.109 kb on + strand at 4284.110 kb on - strand at 4284.124 kb on + strand at 4284.124 kb on + strand at 4284.149 kb on + strand at 4284.450 kb on + strand, within CA264_18415 at 4284.450 kb on + strand, within CA264_18415 at 4284.509 kb on + strand, within CA264_18415 at 4284.510 kb on - strand, within CA264_18415 at 4284.510 kb on - strand, within CA264_18415 at 4284.522 kb on + strand, within CA264_18415 at 4284.523 kb on - strand, within CA264_18415 at 4284.541 kb on - strand, within CA264_18415 at 4284.563 kb on + strand, within CA264_18415 at 4284.564 kb on - strand, within CA264_18415 at 4284.579 kb on + strand, within CA264_18415 at 4284.580 kb on - strand, within CA264_18415 at 4284.615 kb on + strand, within CA264_18415 at 4284.738 kb on + strand, within CA264_18415 at 4284.763 kb on + strand, within CA264_18415 at 4284.763 kb on - strand, within CA264_18415 at 4284.812 kb on - strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.847 kb on + strand, within CA264_18415 at 4284.848 kb on - strand, within CA264_18415 at 4284.848 kb on - strand, within CA264_18415 at 4284.849 kb on + strand, within CA264_18415 at 4284.850 kb on - strand, within CA264_18415 at 4284.851 kb on + strand, within CA264_18415 at 4284.851 kb on + strand, within CA264_18415 at 4284.851 kb on + strand, within CA264_18415 at 4284.852 kb on - strand, within CA264_18415 at 4284.852 kb on - strand, within CA264_18415 at 4284.852 kb on - strand, within CA264_18415 at 4284.857 kb on + strand, within CA264_18415 at 4284.858 kb on - strand, within CA264_18415 at 4285.010 kb on + strand, within CA264_18415 at 4285.010 kb on + strand, within CA264_18415 at 4285.011 kb on - strand, within CA264_18415 at 4285.184 kb on + strand, within CA264_18415 at 4285.186 kb on + strand, within CA264_18415 at 4285.186 kb on + strand, within CA264_18415 at 4285.187 kb on - strand, within CA264_18415 at 4285.187 kb on - strand, within CA264_18415 at 4285.190 kb on + strand, within CA264_18415 at 4285.191 kb on - strand, within CA264_18415 at 4285.191 kb on - strand, within CA264_18415 at 4285.191 kb on - strand, within CA264_18415 at 4285.191 kb on - strand, within CA264_18415 at 4285.229 kb on + strand at 4285.285 kb on - strand at 4285.285 kb on - strand at 4285.297 kb on - strand at 4285.319 kb on + strand at 4285.339 kb on + strand at 4285.345 kb on - strand at 4285.345 kb on - strand at 4285.345 kb on - strand at 4285.345 kb on - strand at 4285.345 kb on - strand at 4285.345 kb on - strand at 4285.347 kb on - strand at 4285.347 kb on - strand at 4285.347 kb on - strand at 4285.347 kb on - strand at 4285.347 kb on - strand at 4285.350 kb on - strand at 4285.350 kb on - strand at 4285.352 kb on - strand at 4285.355 kb on - strand at 4285.360 kb on - strand at 4285.362 kb on - strand at 4285.362 kb on - strand at 4285.365 kb on - strand at 4285.365 kb on - strand at 4285.367 kb on - strand at 4285.367 kb on - strand at 4285.372 kb on - strand at 4285.372 kb on - strand at 4285.375 kb on - strand at 4285.375 kb on - strand at 4285.386 kb on + strand at 4285.394 kb on + strand at 4285.396 kb on + strand at 4285.396 kb on + strand at 4285.396 kb on + strand at 4285.396 kb on + strand at 4285.396 kb on + strand at 4285.396 kb on + strand at 4285.399 kb on + strand at 4285.399 kb on + strand at 4285.399 kb on + strand at 4285.401 kb on + strand at 4285.401 kb on + strand at 4285.404 kb on + strand at 4285.404 kb on + strand at 4285.406 kb on + strand at 4285.406 kb on + strand at 4285.409 kb on + strand at 4285.411 kb on + strand at 4285.411 kb on + strand at 4285.411 kb on + strand at 4285.411 kb on + strand at 4285.414 kb on + strand at 4285.414 kb on + strand at 4285.416 kb on + strand at 4285.416 kb on + strand at 4285.419 kb on + strand at 4285.436 kb on + strand at 4285.436 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 4,283,165 + CA264_18410 0.76 -0.6 4,283,569 - -2.5 4,283,619 - -1.8 4,283,862 - +0.1 4,283,862 - +0.8 4,283,864 - +0.3 4,283,864 - -0.2 4,283,866 + -0.9 4,283,866 + +1.3 4,283,866 + -1.9 4,283,866 + -0.5 4,283,866 + -1.2 4,283,867 - -0.9 4,283,867 - -0.5 4,283,867 - +0.6 4,283,915 + -0.3 4,283,939 + -0.1 4,283,942 + -0.1 4,283,945 + -1.1 4,283,950 + -0.3 4,283,951 - -0.3 4,283,953 + +0.5 4,283,953 + -0.6 4,283,955 + -0.7 4,283,955 + -1.1 4,283,997 + -0.5 4,284,060 - +0.1 4,284,092 + -1.7 4,284,109 + -0.2 4,284,110 - -0.7 4,284,124 + +2.5 4,284,124 + -0.1 4,284,149 + +1.5 4,284,450 + CA264_18415 0.28 -0.7 4,284,450 + CA264_18415 0.28 -0.2 4,284,509 + CA264_18415 0.33 -0.5 4,284,510 - CA264_18415 0.33 +0.1 4,284,510 - CA264_18415 0.33 -1.5 4,284,522 + CA264_18415 0.34 -0.1 4,284,523 - CA264_18415 0.34 +0.6 4,284,541 - CA264_18415 0.36 -0.2 4,284,563 + CA264_18415 0.37 -0.6 4,284,564 - CA264_18415 0.37 -0.4 4,284,579 + CA264_18415 0.39 -0.1 4,284,580 - CA264_18415 0.39 -1.0 4,284,615 + CA264_18415 0.41 -0.7 4,284,738 + CA264_18415 0.51 -0.3 4,284,763 + CA264_18415 0.53 -0.4 4,284,763 - CA264_18415 0.53 -0.4 4,284,812 - CA264_18415 0.57 -0.2 4,284,847 + CA264_18415 0.60 -0.4 4,284,847 + CA264_18415 0.60 +0.1 4,284,847 + CA264_18415 0.60 +0.0 4,284,847 + CA264_18415 0.60 -0.3 4,284,847 + CA264_18415 0.60 +0.4 4,284,848 - CA264_18415 0.60 +0.0 4,284,848 - CA264_18415 0.60 +0.1 4,284,849 + CA264_18415 0.60 +0.7 4,284,850 - CA264_18415 0.60 -0.9 4,284,851 + CA264_18415 0.60 -0.0 4,284,851 + CA264_18415 0.60 +0.0 4,284,851 + CA264_18415 0.60 +0.9 4,284,852 - CA264_18415 0.60 -1.0 4,284,852 - CA264_18415 0.60 +0.1 4,284,852 - CA264_18415 0.60 -0.4 4,284,857 + CA264_18415 0.61 +0.2 4,284,858 - CA264_18415 0.61 -0.4 4,285,010 + CA264_18415 0.73 -0.5 4,285,010 + CA264_18415 0.73 +0.6 4,285,011 - CA264_18415 0.73 +0.2 4,285,184 + CA264_18415 0.87 +1.3 4,285,186 + CA264_18415 0.87 -1.5 4,285,186 + CA264_18415 0.87 -1.2 4,285,187 - CA264_18415 0.87 -0.2 4,285,187 - CA264_18415 0.87 +0.5 4,285,190 + CA264_18415 0.88 +1.1 4,285,191 - CA264_18415 0.88 -0.5 4,285,191 - CA264_18415 0.88 +0.1 4,285,191 - CA264_18415 0.88 +0.2 4,285,191 - CA264_18415 0.88 -1.2 4,285,229 + +0.9 4,285,285 - +0.4 4,285,285 - -1.0 4,285,297 - -0.2 4,285,319 + -0.2 4,285,339 + -0.1 4,285,345 - -0.3 4,285,345 - +0.7 4,285,345 - -0.2 4,285,345 - -1.1 4,285,345 - +0.6 4,285,345 - -0.1 4,285,347 - -0.8 4,285,347 - -0.6 4,285,347 - +0.7 4,285,347 - +0.6 4,285,347 - -0.7 4,285,350 - -0.2 4,285,350 - -0.6 4,285,352 - +0.3 4,285,355 - -0.0 4,285,360 - -0.2 4,285,362 - -0.1 4,285,362 - -0.5 4,285,365 - -0.2 4,285,365 - -0.9 4,285,367 - -0.3 4,285,367 - -0.7 4,285,372 - +0.4 4,285,372 - -0.3 4,285,375 - +0.1 4,285,375 - +0.7 4,285,386 + +0.0 4,285,394 + -0.5 4,285,396 + +0.4 4,285,396 + +0.6 4,285,396 + -0.7 4,285,396 + -0.3 4,285,396 + -0.0 4,285,396 + -0.9 4,285,399 + +0.1 4,285,399 + +2.0 4,285,399 + +0.7 4,285,401 + +0.7 4,285,401 + +0.1 4,285,404 + -0.6 4,285,404 + -0.5 4,285,406 + -2.2 4,285,406 + +0.3 4,285,409 + +0.2 4,285,411 + +0.3 4,285,411 + -1.2 4,285,411 + -1.3 4,285,411 + -0.1 4,285,414 + -0.1 4,285,414 + +1.5 4,285,416 + +0.3 4,285,416 + +0.2 4,285,419 + -1.3 4,285,436 + +0.5 4,285,436 + +1.0
Or see this region's nucleotide sequence