Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17820

Experiment: m.b. Carbenicillin 0.0015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_17815 and CA264_17820 are separated by 13 nucleotidesCA264_17820 and CA264_17825 are separated by 56 nucleotides CA264_17815: CA264_17815 - hypothetical protein, at 4,142,169 to 4,143,347 _17815 CA264_17820: CA264_17820 - amino acid dehydrogenase, at 4,143,361 to 4,144,593 _17820 CA264_17825: CA264_17825 - anhydro-N-acetylmuramic acid kinase, at 4,144,650 to 4,145,723 _17825 Position (kb) 4143 4144 4145Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4142.365 kb on + strand, within CA264_17815at 4142.366 kb on - strand, within CA264_17815at 4142.449 kb on - strand, within CA264_17815at 4142.452 kb on + strand, within CA264_17815at 4142.452 kb on + strand, within CA264_17815at 4142.453 kb on - strand, within CA264_17815at 4142.460 kb on + strand, within CA264_17815at 4142.472 kb on - strand, within CA264_17815at 4142.503 kb on + strand, within CA264_17815at 4142.504 kb on - strand, within CA264_17815at 4143.074 kb on - strand, within CA264_17815at 4143.135 kb on + strand, within CA264_17815at 4143.136 kb on - strand, within CA264_17815at 4143.240 kb on - strandat 4143.275 kb on - strandat 4143.348 kb on - strandat 4143.348 kb on - strandat 4143.362 kb on + strandat 4143.468 kb on + strandat 4143.481 kb on - strandat 4143.760 kb on + strand, within CA264_17820at 4143.887 kb on - strand, within CA264_17820at 4143.887 kb on - strand, within CA264_17820at 4143.891 kb on + strand, within CA264_17820at 4143.961 kb on + strand, within CA264_17820at 4144.065 kb on + strand, within CA264_17820at 4144.304 kb on + strand, within CA264_17820at 4144.353 kb on + strand, within CA264_17820at 4144.395 kb on + strand, within CA264_17820at 4144.395 kb on + strand, within CA264_17820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
remove
4,142,365 + CA264_17815 0.17 +0.2
4,142,366 - CA264_17815 0.17 +0.1
4,142,449 - CA264_17815 0.24 +0.2
4,142,452 + CA264_17815 0.24 +0.2
4,142,452 + CA264_17815 0.24 -1.5
4,142,453 - CA264_17815 0.24 +0.2
4,142,460 + CA264_17815 0.25 +0.5
4,142,472 - CA264_17815 0.26 +0.9
4,142,503 + CA264_17815 0.28 -0.4
4,142,504 - CA264_17815 0.28 +0.8
4,143,074 - CA264_17815 0.77 -0.2
4,143,135 + CA264_17815 0.82 -0.7
4,143,136 - CA264_17815 0.82 -0.1
4,143,240 - +0.2
4,143,275 - -0.2
4,143,348 - -1.3
4,143,348 - -3.5
4,143,362 + -0.4
4,143,468 + -0.0
4,143,481 - -0.4
4,143,760 + CA264_17820 0.32 -1.0
4,143,887 - CA264_17820 0.43 -1.1
4,143,887 - CA264_17820 0.43 +0.2
4,143,891 + CA264_17820 0.43 -0.3
4,143,961 + CA264_17820 0.49 -4.0
4,144,065 + CA264_17820 0.57 -4.3
4,144,304 + CA264_17820 0.76 -3.0
4,144,353 + CA264_17820 0.80 -0.5
4,144,395 + CA264_17820 0.84 -0.6
4,144,395 + CA264_17820 0.84 -4.6

Or see this region's nucleotide sequence