Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17810 and CA264_17815 are separated by 334 nucleotides CA264_17815 and CA264_17820 are separated by 13 nucleotides
CA264_17810: CA264_17810 - hypothetical protein, at 4,139,348 to 4,141,834
_17810
CA264_17815: CA264_17815 - hypothetical protein, at 4,142,169 to 4,143,347
_17815
CA264_17820: CA264_17820 - amino acid dehydrogenase, at 4,143,361 to 4,144,593
_17820
Position (kb)
4142
4143
4144 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4141.267 kb on - strand, within CA264_17810 at 4141.360 kb on + strand, within CA264_17810 at 4141.360 kb on + strand, within CA264_17810 at 4141.459 kb on + strand, within CA264_17810 at 4141.460 kb on - strand, within CA264_17810 at 4141.462 kb on - strand, within CA264_17810 at 4141.548 kb on - strand, within CA264_17810 at 4141.548 kb on - strand, within CA264_17810 at 4141.548 kb on - strand, within CA264_17810 at 4141.548 kb on - strand, within CA264_17810 at 4141.636 kb on + strand at 4141.636 kb on + strand at 4141.636 kb on + strand at 4141.637 kb on - strand at 4141.637 kb on - strand at 4141.637 kb on - strand at 4141.833 kb on - strand at 4141.833 kb on - strand at 4141.879 kb on + strand at 4141.979 kb on + strand at 4141.979 kb on + strand at 4141.979 kb on + strand at 4141.987 kb on + strand at 4142.032 kb on - strand at 4142.080 kb on + strand at 4142.080 kb on + strand at 4142.114 kb on + strand at 4142.120 kb on + strand at 4142.161 kb on - strand at 4142.170 kb on + strand at 4142.222 kb on + strand at 4142.222 kb on + strand at 4142.222 kb on + strand at 4142.223 kb on - strand at 4142.223 kb on - strand at 4142.245 kb on + strand at 4142.245 kb on + strand at 4142.298 kb on + strand, within CA264_17815 at 4142.325 kb on - strand, within CA264_17815 at 4142.365 kb on + strand, within CA264_17815 at 4142.366 kb on - strand, within CA264_17815 at 4142.449 kb on - strand, within CA264_17815 at 4142.452 kb on + strand, within CA264_17815 at 4142.452 kb on + strand, within CA264_17815 at 4142.453 kb on - strand, within CA264_17815 at 4142.460 kb on + strand, within CA264_17815 at 4142.472 kb on - strand, within CA264_17815 at 4142.503 kb on + strand, within CA264_17815 at 4142.504 kb on - strand, within CA264_17815 at 4143.074 kb on - strand, within CA264_17815 at 4143.135 kb on + strand, within CA264_17815 at 4143.136 kb on - strand, within CA264_17815 at 4143.240 kb on - strand at 4143.275 kb on - strand at 4143.348 kb on - strand at 4143.348 kb on - strand at 4143.362 kb on + strand at 4143.468 kb on + strand at 4143.481 kb on - strand at 4143.760 kb on + strand, within CA264_17820 at 4143.887 kb on - strand, within CA264_17820 at 4143.887 kb on - strand, within CA264_17820 at 4143.891 kb on + strand, within CA264_17820 at 4143.961 kb on + strand, within CA264_17820 at 4144.065 kb on + strand, within CA264_17820 at 4144.304 kb on + strand, within CA264_17820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 4,141,267 - CA264_17810 0.77 -0.0 4,141,360 + CA264_17810 0.81 -0.7 4,141,360 + CA264_17810 0.81 -0.4 4,141,459 + CA264_17810 0.85 +0.5 4,141,460 - CA264_17810 0.85 -1.4 4,141,462 - CA264_17810 0.85 -0.4 4,141,548 - CA264_17810 0.88 -1.0 4,141,548 - CA264_17810 0.88 +0.9 4,141,548 - CA264_17810 0.88 -0.8 4,141,548 - CA264_17810 0.88 -0.8 4,141,636 + +0.6 4,141,636 + -0.7 4,141,636 + -1.3 4,141,637 - -0.1 4,141,637 - -0.6 4,141,637 - +0.0 4,141,833 - +0.2 4,141,833 - +0.9 4,141,879 + +0.2 4,141,979 + +0.5 4,141,979 + +1.3 4,141,979 + -0.5 4,141,987 + -0.1 4,142,032 - -0.8 4,142,080 + -0.1 4,142,080 + +0.1 4,142,114 + -0.1 4,142,120 + +0.1 4,142,161 - +0.1 4,142,170 + -0.2 4,142,222 + -2.7 4,142,222 + -0.2 4,142,222 + -2.8 4,142,223 - +1.2 4,142,223 - +0.2 4,142,245 + -0.4 4,142,245 + +0.4 4,142,298 + CA264_17815 0.11 -1.1 4,142,325 - CA264_17815 0.13 +0.6 4,142,365 + CA264_17815 0.17 +0.2 4,142,366 - CA264_17815 0.17 +0.1 4,142,449 - CA264_17815 0.24 +0.2 4,142,452 + CA264_17815 0.24 +0.2 4,142,452 + CA264_17815 0.24 -1.5 4,142,453 - CA264_17815 0.24 +0.2 4,142,460 + CA264_17815 0.25 +0.5 4,142,472 - CA264_17815 0.26 +0.9 4,142,503 + CA264_17815 0.28 -0.4 4,142,504 - CA264_17815 0.28 +0.8 4,143,074 - CA264_17815 0.77 -0.2 4,143,135 + CA264_17815 0.82 -0.7 4,143,136 - CA264_17815 0.82 -0.1 4,143,240 - +0.2 4,143,275 - -0.2 4,143,348 - -1.3 4,143,348 - -3.5 4,143,362 + -0.4 4,143,468 + -0.0 4,143,481 - -0.4 4,143,760 + CA264_17820 0.32 -1.0 4,143,887 - CA264_17820 0.43 -1.1 4,143,887 - CA264_17820 0.43 +0.2 4,143,891 + CA264_17820 0.43 -0.3 4,143,961 + CA264_17820 0.49 -4.0 4,144,065 + CA264_17820 0.57 -4.3 4,144,304 + CA264_17820 0.76 -3.0
Or see this region's nucleotide sequence