Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16950 and CA264_16955 are separated by 9 nucleotides CA264_16955 and CA264_16960 are separated by 80 nucleotides CA264_16960 and CA264_16965 are separated by 90 nucleotides CA264_16965 and CA264_16970 are separated by 154 nucleotides
CA264_16950: CA264_16950 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 3,945,271 to 3,946,797
_16950
CA264_16955: CA264_16955 - hypothetical protein, at 3,946,807 to 3,947,388
_16955
CA264_16960: CA264_16960 - T9SS C-terminal target domain-containing protein, at 3,947,469 to 3,948,971
_16960
CA264_16965: CA264_16965 - hypothetical protein, at 3,949,062 to 3,949,481
_16965
CA264_16970: CA264_16970 - hypothetical protein, at 3,949,636 to 3,951,009
_16970
Position (kb)
3947
3948
3949 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3946.788 kb on - strand at 3946.799 kb on + strand at 3946.822 kb on + strand at 3946.888 kb on - strand, within CA264_16955 at 3946.973 kb on + strand, within CA264_16955 at 3947.095 kb on + strand, within CA264_16955 at 3947.098 kb on + strand, within CA264_16955 at 3947.099 kb on - strand, within CA264_16955 at 3947.099 kb on - strand, within CA264_16955 at 3947.099 kb on - strand, within CA264_16955 at 3947.183 kb on - strand, within CA264_16955 at 3947.183 kb on - strand, within CA264_16955 at 3947.183 kb on - strand, within CA264_16955 at 3947.217 kb on - strand, within CA264_16955 at 3947.276 kb on + strand, within CA264_16955 at 3947.309 kb on + strand, within CA264_16955 at 3947.310 kb on - strand, within CA264_16955 at 3947.317 kb on + strand, within CA264_16955 at 3947.317 kb on + strand, within CA264_16955 at 3947.318 kb on - strand, within CA264_16955 at 3947.319 kb on + strand, within CA264_16955 at 3947.387 kb on - strand at 3947.387 kb on - strand at 3947.398 kb on + strand at 3947.399 kb on - strand at 3947.402 kb on - strand at 3947.456 kb on - strand at 3947.456 kb on - strand at 3947.456 kb on - strand at 3947.457 kb on + strand at 3947.647 kb on + strand, within CA264_16960 at 3947.647 kb on + strand, within CA264_16960 at 3947.696 kb on + strand, within CA264_16960 at 3947.718 kb on - strand, within CA264_16960 at 3947.722 kb on - strand, within CA264_16960 at 3947.830 kb on - strand, within CA264_16960 at 3947.947 kb on - strand, within CA264_16960 at 3947.970 kb on - strand, within CA264_16960 at 3948.109 kb on - strand, within CA264_16960 at 3948.153 kb on + strand, within CA264_16960 at 3948.153 kb on + strand, within CA264_16960 at 3948.154 kb on - strand, within CA264_16960 at 3948.154 kb on - strand, within CA264_16960 at 3948.279 kb on + strand, within CA264_16960 at 3948.280 kb on - strand, within CA264_16960 at 3948.408 kb on + strand, within CA264_16960 at 3948.473 kb on + strand, within CA264_16960 at 3948.474 kb on - strand, within CA264_16960 at 3948.521 kb on - strand, within CA264_16960 at 3948.535 kb on + strand, within CA264_16960 at 3948.601 kb on + strand, within CA264_16960 at 3948.640 kb on - strand, within CA264_16960 at 3948.657 kb on + strand, within CA264_16960 at 3948.657 kb on + strand, within CA264_16960 at 3948.657 kb on + strand, within CA264_16960 at 3948.658 kb on - strand, within CA264_16960 at 3948.658 kb on - strand, within CA264_16960 at 3948.664 kb on + strand, within CA264_16960 at 3948.665 kb on - strand, within CA264_16960 at 3948.676 kb on + strand, within CA264_16960 at 3948.677 kb on - strand, within CA264_16960 at 3948.691 kb on + strand, within CA264_16960 at 3948.696 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.733 kb on + strand, within CA264_16960 at 3948.771 kb on + strand, within CA264_16960 at 3948.771 kb on + strand, within CA264_16960 at 3948.772 kb on - strand, within CA264_16960 at 3948.772 kb on - strand, within CA264_16960 at 3948.777 kb on - strand, within CA264_16960 at 3948.886 kb on + strand at 3948.886 kb on + strand at 3948.909 kb on + strand at 3948.910 kb on - strand at 3948.990 kb on - strand at 3948.994 kb on - strand at 3948.994 kb on - strand at 3949.008 kb on + strand at 3949.012 kb on + strand at 3949.013 kb on - strand at 3949.014 kb on + strand at 3949.015 kb on - strand at 3949.127 kb on - strand, within CA264_16965 at 3949.170 kb on - strand, within CA264_16965 at 3949.173 kb on + strand, within CA264_16965 at 3949.173 kb on + strand, within CA264_16965 at 3949.173 kb on + strand, within CA264_16965 at 3949.237 kb on - strand, within CA264_16965 at 3949.249 kb on + strand, within CA264_16965 at 3949.330 kb on - strand, within CA264_16965 at 3949.349 kb on + strand, within CA264_16965 at 3949.349 kb on + strand, within CA264_16965 at 3949.350 kb on - strand, within CA264_16965 at 3949.350 kb on - strand, within CA264_16965 at 3949.383 kb on + strand, within CA264_16965 at 3949.383 kb on + strand, within CA264_16965 at 3949.462 kb on - strand at 3949.481 kb on + strand at 3949.482 kb on - strand at 3949.487 kb on + strand at 3949.487 kb on + strand at 3949.488 kb on - strand at 3949.541 kb on + strand at 3949.542 kb on - strand at 3949.543 kb on + strand at 3949.544 kb on - strand at 3949.544 kb on - strand at 3949.544 kb on - strand at 3949.544 kb on - strand at 3949.547 kb on + strand at 3949.547 kb on + strand at 3949.547 kb on + strand at 3949.548 kb on - strand at 3949.548 kb on - strand at 3949.549 kb on + strand at 3949.549 kb on + strand at 3949.550 kb on - strand at 3949.583 kb on + strand at 3949.595 kb on - strand at 3949.611 kb on + strand at 3949.612 kb on - strand at 3949.612 kb on - strand at 3949.615 kb on + strand at 3949.616 kb on - strand at 3949.643 kb on - strand at 3949.643 kb on - strand at 3949.643 kb on - strand at 3949.647 kb on + strand at 3949.656 kb on - strand at 3949.759 kb on + strand at 3949.760 kb on - strand at 3949.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 3,946,788 - -1.7 3,946,799 + -0.1 3,946,822 + -1.7 3,946,888 - CA264_16955 0.14 -2.0 3,946,973 + CA264_16955 0.29 +1.1 3,947,095 + CA264_16955 0.49 -0.9 3,947,098 + CA264_16955 0.50 -0.7 3,947,099 - CA264_16955 0.50 +0.9 3,947,099 - CA264_16955 0.50 -2.3 3,947,099 - CA264_16955 0.50 -0.4 3,947,183 - CA264_16955 0.65 -0.1 3,947,183 - CA264_16955 0.65 -0.6 3,947,183 - CA264_16955 0.65 -2.0 3,947,217 - CA264_16955 0.70 +0.0 3,947,276 + CA264_16955 0.81 +0.4 3,947,309 + CA264_16955 0.86 -0.5 3,947,310 - CA264_16955 0.86 -1.5 3,947,317 + CA264_16955 0.88 -0.4 3,947,317 + CA264_16955 0.88 +0.9 3,947,318 - CA264_16955 0.88 -1.2 3,947,319 + CA264_16955 0.88 +0.5 3,947,387 - -0.3 3,947,387 - -0.0 3,947,398 + -0.4 3,947,399 - -0.4 3,947,402 - -0.5 3,947,456 - +0.9 3,947,456 - +0.2 3,947,456 - -0.3 3,947,457 + +0.0 3,947,647 + CA264_16960 0.12 -2.4 3,947,647 + CA264_16960 0.12 -2.5 3,947,696 + CA264_16960 0.15 -0.5 3,947,718 - CA264_16960 0.17 -0.3 3,947,722 - CA264_16960 0.17 -1.3 3,947,830 - CA264_16960 0.24 -0.1 3,947,947 - CA264_16960 0.32 -2.6 3,947,970 - CA264_16960 0.33 -0.8 3,948,109 - CA264_16960 0.43 -1.0 3,948,153 + CA264_16960 0.46 -0.1 3,948,153 + CA264_16960 0.46 +0.1 3,948,154 - CA264_16960 0.46 -1.0 3,948,154 - CA264_16960 0.46 +0.2 3,948,279 + CA264_16960 0.54 -1.1 3,948,280 - CA264_16960 0.54 +0.2 3,948,408 + CA264_16960 0.62 +0.6 3,948,473 + CA264_16960 0.67 -0.2 3,948,474 - CA264_16960 0.67 -0.2 3,948,521 - CA264_16960 0.70 -0.9 3,948,535 + CA264_16960 0.71 -1.0 3,948,601 + CA264_16960 0.75 +1.0 3,948,640 - CA264_16960 0.78 -0.4 3,948,657 + CA264_16960 0.79 +0.0 3,948,657 + CA264_16960 0.79 +0.4 3,948,657 + CA264_16960 0.79 +0.5 3,948,658 - CA264_16960 0.79 -0.8 3,948,658 - CA264_16960 0.79 +0.1 3,948,664 + CA264_16960 0.80 -0.5 3,948,665 - CA264_16960 0.80 -0.2 3,948,676 + CA264_16960 0.80 +0.6 3,948,677 - CA264_16960 0.80 -1.0 3,948,691 + CA264_16960 0.81 -0.1 3,948,696 - CA264_16960 0.82 +1.9 3,948,722 - CA264_16960 0.83 +0.3 3,948,722 - CA264_16960 0.83 +0.4 3,948,722 - CA264_16960 0.83 -0.2 3,948,722 - CA264_16960 0.83 +1.9 3,948,733 + CA264_16960 0.84 -0.3 3,948,771 + CA264_16960 0.87 +0.9 3,948,771 + CA264_16960 0.87 +0.1 3,948,772 - CA264_16960 0.87 -0.1 3,948,772 - CA264_16960 0.87 +1.1 3,948,777 - CA264_16960 0.87 -0.0 3,948,886 + +0.4 3,948,886 + +0.9 3,948,909 + +0.1 3,948,910 - -0.9 3,948,990 - +0.1 3,948,994 - -0.0 3,948,994 - +0.0 3,949,008 + +0.9 3,949,012 + +0.8 3,949,013 - -1.1 3,949,014 + -0.0 3,949,015 - +0.0 3,949,127 - CA264_16965 0.15 +0.8 3,949,170 - CA264_16965 0.26 +1.0 3,949,173 + CA264_16965 0.26 +2.6 3,949,173 + CA264_16965 0.26 +1.5 3,949,173 + CA264_16965 0.26 -0.1 3,949,237 - CA264_16965 0.42 +0.9 3,949,249 + CA264_16965 0.45 +1.3 3,949,330 - CA264_16965 0.64 -0.7 3,949,349 + CA264_16965 0.68 +1.4 3,949,349 + CA264_16965 0.68 +1.1 3,949,350 - CA264_16965 0.69 +0.5 3,949,350 - CA264_16965 0.69 +1.0 3,949,383 + CA264_16965 0.76 +1.1 3,949,383 + CA264_16965 0.76 +1.8 3,949,462 - +1.4 3,949,481 + +0.4 3,949,482 - +0.5 3,949,487 + -0.1 3,949,487 + +0.1 3,949,488 - +0.3 3,949,541 + +0.7 3,949,542 - +0.2 3,949,543 + -0.4 3,949,544 - -0.2 3,949,544 - +1.0 3,949,544 - -0.0 3,949,544 - +1.5 3,949,547 + +1.3 3,949,547 + +0.1 3,949,547 + +0.6 3,949,548 - +0.4 3,949,548 - +0.6 3,949,549 + +0.4 3,949,549 + -0.0 3,949,550 - -0.3 3,949,583 + +0.6 3,949,595 - +0.1 3,949,611 + -0.1 3,949,612 - +0.8 3,949,612 - +1.5 3,949,615 + +0.3 3,949,616 - -0.1 3,949,643 - -0.2 3,949,643 - -3.1 3,949,643 - -0.2 3,949,647 + +0.0 3,949,656 - -0.1 3,949,759 + +0.0 3,949,760 - +0.7 3,949,773 - -0.3
Or see this region's nucleotide sequence