Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14540

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14535 and CA264_14540 are separated by 268 nucleotidesCA264_14540 and CA264_14545 are separated by 0 nucleotidesCA264_14545 and CA264_14550 are separated by 72 nucleotides CA264_14535: CA264_14535 - lytic transglycosylase, at 3,409,712 to 3,411,232 _14535 CA264_14540: CA264_14540 - NADP-dependent malic enzyme, at 3,411,501 to 3,413,771 _14540 CA264_14545: CA264_14545 - Holliday junction branch migration protein RuvA, at 3,413,772 to 3,414,362 _14545 CA264_14550: CA264_14550 - cell surface protein SprA, at 3,414,435 to 3,421,562 _14550 Position (kb) 3411 3412 3413 3414Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3410.504 kb on + strand, within CA264_14535at 3410.504 kb on + strand, within CA264_14535at 3410.504 kb on + strand, within CA264_14535at 3410.505 kb on - strand, within CA264_14535at 3410.561 kb on + strand, within CA264_14535at 3410.561 kb on + strand, within CA264_14535at 3410.571 kb on + strand, within CA264_14535at 3410.571 kb on + strand, within CA264_14535at 3410.572 kb on - strand, within CA264_14535at 3410.688 kb on - strand, within CA264_14535at 3410.688 kb on - strand, within CA264_14535at 3410.690 kb on - strand, within CA264_14535at 3410.752 kb on + strand, within CA264_14535at 3410.753 kb on - strand, within CA264_14535at 3410.878 kb on + strand, within CA264_14535at 3410.882 kb on + strand, within CA264_14535at 3410.882 kb on + strand, within CA264_14535at 3410.883 kb on - strand, within CA264_14535at 3410.883 kb on - strand, within CA264_14535at 3410.883 kb on - strand, within CA264_14535at 3410.884 kb on + strand, within CA264_14535at 3410.884 kb on + strand, within CA264_14535at 3411.000 kb on + strand, within CA264_14535at 3411.098 kb on + strandat 3411.143 kb on + strandat 3411.146 kb on - strandat 3411.243 kb on + strandat 3411.243 kb on + strandat 3411.243 kb on + strandat 3411.243 kb on + strandat 3411.244 kb on - strandat 3411.244 kb on - strandat 3411.244 kb on - strandat 3411.256 kb on - strandat 3411.302 kb on - strandat 3411.312 kb on + strandat 3411.346 kb on + strandat 3411.415 kb on + strandat 3411.424 kb on + strandat 3411.469 kb on + strandat 3411.469 kb on + strandat 3411.470 kb on - strandat 3411.478 kb on - strandat 3411.481 kb on + strandat 3411.481 kb on + strandat 3411.482 kb on - strandat 3411.482 kb on - strandat 3411.487 kb on - strandat 3411.531 kb on + strandat 3411.667 kb on + strandat 3411.667 kb on + strandat 3411.667 kb on + strandat 3411.667 kb on + strandat 3411.668 kb on - strandat 3411.669 kb on + strandat 3411.669 kb on + strandat 3411.670 kb on - strandat 3411.671 kb on + strandat 3411.672 kb on - strandat 3411.676 kb on - strandat 3411.676 kb on - strandat 3411.929 kb on + strand, within CA264_14540at 3412.196 kb on + strand, within CA264_14540at 3412.218 kb on - strand, within CA264_14540at 3412.268 kb on - strand, within CA264_14540at 3412.268 kb on - strand, within CA264_14540at 3412.319 kb on + strand, within CA264_14540at 3412.468 kb on - strand, within CA264_14540at 3412.848 kb on + strand, within CA264_14540at 3412.856 kb on - strand, within CA264_14540at 3413.105 kb on + strand, within CA264_14540at 3413.195 kb on - strand, within CA264_14540at 3413.195 kb on - strand, within CA264_14540at 3413.233 kb on - strand, within CA264_14540at 3413.259 kb on + strand, within CA264_14540at 3413.260 kb on - strand, within CA264_14540at 3413.281 kb on + strand, within CA264_14540at 3413.382 kb on + strand, within CA264_14540at 3413.674 kb on + strandat 3413.752 kb on - strandat 3413.756 kb on + strandat 3413.757 kb on - strandat 3413.765 kb on + strandat 3413.765 kb on + strandat 3413.769 kb on + strandat 3414.367 kb on + strandat 3414.367 kb on + strandat 3414.367 kb on + strandat 3414.368 kb on - strandat 3414.368 kb on - strandat 3414.369 kb on + strandat 3414.370 kb on - strandat 3414.428 kb on + strandat 3414.428 kb on + strandat 3414.517 kb on + strandat 3414.517 kb on + strandat 3414.518 kb on - strandat 3414.518 kb on - strandat 3414.549 kb on + strandat 3414.549 kb on + strandat 3414.549 kb on + strandat 3414.550 kb on - strandat 3414.550 kb on - strandat 3414.550 kb on - strandat 3414.551 kb on + strandat 3414.637 kb on + strandat 3414.661 kb on + strandat 3414.661 kb on + strandat 3414.662 kb on - strandat 3414.696 kb on - strandat 3414.724 kb on + strandat 3414.724 kb on + strandat 3414.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,410,504 + CA264_14535 0.52 -0.1
3,410,504 + CA264_14535 0.52 -0.6
3,410,504 + CA264_14535 0.52 +0.1
3,410,505 - CA264_14535 0.52 -0.2
3,410,561 + CA264_14535 0.56 -1.8
3,410,561 + CA264_14535 0.56 +0.3
3,410,571 + CA264_14535 0.56 +0.2
3,410,571 + CA264_14535 0.56 -0.1
3,410,572 - CA264_14535 0.57 +0.1
3,410,688 - CA264_14535 0.64 +0.5
3,410,688 - CA264_14535 0.64 +0.2
3,410,690 - CA264_14535 0.64 +0.9
3,410,752 + CA264_14535 0.68 -0.3
3,410,753 - CA264_14535 0.68 +0.2
3,410,878 + CA264_14535 0.77 -0.4
3,410,882 + CA264_14535 0.77 -2.0
3,410,882 + CA264_14535 0.77 +1.4
3,410,883 - CA264_14535 0.77 +0.5
3,410,883 - CA264_14535 0.77 +0.1
3,410,883 - CA264_14535 0.77 -0.5
3,410,884 + CA264_14535 0.77 +0.6
3,410,884 + CA264_14535 0.77 -0.2
3,411,000 + CA264_14535 0.85 +0.4
3,411,098 + -1.2
3,411,143 + -0.9
3,411,146 - +0.5
3,411,243 + -0.3
3,411,243 + +0.3
3,411,243 + -0.2
3,411,243 + -1.7
3,411,244 - -0.2
3,411,244 - -0.1
3,411,244 - +0.2
3,411,256 - +0.8
3,411,302 - -0.5
3,411,312 + -1.9
3,411,346 + +0.2
3,411,415 + -1.3
3,411,424 + -1.0
3,411,469 + -2.4
3,411,469 + -0.1
3,411,470 - -0.8
3,411,478 - -0.6
3,411,481 + +1.9
3,411,481 + -1.8
3,411,482 - -0.5
3,411,482 - -0.5
3,411,487 - -1.9
3,411,531 + -3.9
3,411,667 + -0.7
3,411,667 + -4.4
3,411,667 + -1.7
3,411,667 + -3.7
3,411,668 - -3.5
3,411,669 + -3.4
3,411,669 + -1.4
3,411,670 - -0.8
3,411,671 + -1.1
3,411,672 - -3.1
3,411,676 - -3.4
3,411,676 - -3.8
3,411,929 + CA264_14540 0.19 -2.8
3,412,196 + CA264_14540 0.31 -1.2
3,412,218 - CA264_14540 0.32 -0.9
3,412,268 - CA264_14540 0.34 -3.8
3,412,268 - CA264_14540 0.34 -4.0
3,412,319 + CA264_14540 0.36 -4.6
3,412,468 - CA264_14540 0.43 -4.5
3,412,848 + CA264_14540 0.59 -1.2
3,412,856 - CA264_14540 0.60 -3.8
3,413,105 + CA264_14540 0.71 -1.2
3,413,195 - CA264_14540 0.75 -0.8
3,413,195 - CA264_14540 0.75 -2.0
3,413,233 - CA264_14540 0.76 -2.0
3,413,259 + CA264_14540 0.77 -2.0
3,413,260 - CA264_14540 0.77 -2.0
3,413,281 + CA264_14540 0.78 -0.8
3,413,382 + CA264_14540 0.83 -1.1
3,413,674 + -4.6
3,413,752 - -0.7
3,413,756 + +0.0
3,413,757 - -1.7
3,413,765 + -0.7
3,413,765 + -1.5
3,413,769 + -0.6
3,414,367 + -1.9
3,414,367 + +0.5
3,414,367 + +0.6
3,414,368 - -0.1
3,414,368 - -1.6
3,414,369 + +0.7
3,414,370 - -1.1
3,414,428 + -3.3
3,414,428 + -3.5
3,414,517 + +0.3
3,414,517 + -3.0
3,414,518 - -3.0
3,414,518 - -2.4
3,414,549 + -0.3
3,414,549 + -2.5
3,414,549 + -1.8
3,414,550 - -1.9
3,414,550 - -3.0
3,414,550 - -1.1
3,414,551 + -1.3
3,414,637 + -3.1
3,414,661 + -0.1
3,414,661 + -5.2
3,414,662 - -2.6
3,414,696 - -3.1
3,414,724 + +0.3
3,414,724 + -3.4
3,414,747 - -0.3

Or see this region's nucleotide sequence