Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14205

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14195 and CA264_14200 are separated by 227 nucleotidesCA264_14200 and CA264_14205 are separated by 80 nucleotidesCA264_14205 and CA264_14210 are separated by 5 nucleotidesCA264_14210 and CA264_14215 are separated by 57 nucleotides CA264_14195: CA264_14195 - 1-pyrroline-5-carboxylate dehydrogenase, at 3,332,288 to 3,333,922 _14195 CA264_14200: CA264_14200 - NADH-quinone oxidoreductase subunit A, at 3,334,150 to 3,334,530 _14200 CA264_14205: CA264_14205 - NADH-quinone oxidoreductase subunit B, at 3,334,611 to 3,335,165 _14205 CA264_14210: CA264_14210 - NADH-quinone oxidoreductase subunit C, at 3,335,171 to 3,335,677 _14210 CA264_14215: CA264_14215 - NADH dehydrogenase (quinone) subunit D, at 3,335,735 to 3,336,979 _14215 Position (kb) 3334 3335 3336Strain fitness (log2 ratio) -2 -1 0 1 2at 3333.695 kb on + strand, within CA264_14195at 3333.734 kb on + strand, within CA264_14195at 3333.735 kb on - strand, within CA264_14195at 3333.859 kb on + strandat 3333.859 kb on + strandat 3333.886 kb on - strandat 3333.923 kb on + strandat 3333.925 kb on + strandat 3333.926 kb on - strandat 3333.926 kb on - strandat 3333.946 kb on + strandat 3333.996 kb on + strandat 3334.072 kb on + strandat 3334.073 kb on - strandat 3334.073 kb on - strandat 3334.078 kb on + strandat 3334.078 kb on + strandat 3334.078 kb on + strandat 3334.078 kb on + strandat 3334.083 kb on + strandat 3334.084 kb on - strandat 3334.106 kb on + strandat 3334.106 kb on + strandat 3334.107 kb on - strandat 3334.107 kb on - strandat 3334.107 kb on - strandat 3334.107 kb on - strandat 3334.109 kb on - strandat 3334.164 kb on - strandat 3334.164 kb on - strandat 3334.176 kb on - strandat 3334.176 kb on - strandat 3334.176 kb on - strandat 3334.191 kb on - strand, within CA264_14200at 3334.517 kb on + strandat 3334.537 kb on - strandat 3335.655 kb on + strandat 3335.655 kb on + strandat 3335.655 kb on + strandat 3335.655 kb on + strandat 3335.659 kb on + strandat 3335.659 kb on + strandat 3335.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,333,695 + CA264_14195 0.86 -0.4
3,333,734 + CA264_14195 0.88 +0.9
3,333,735 - CA264_14195 0.89 +0.2
3,333,859 + -0.0
3,333,859 + +1.2
3,333,886 - -0.6
3,333,923 + +0.9
3,333,925 + +0.4
3,333,926 - +0.7
3,333,926 - -0.2
3,333,946 + -1.4
3,333,996 + -1.0
3,334,072 + +0.6
3,334,073 - +1.8
3,334,073 - +1.0
3,334,078 + +1.4
3,334,078 + +0.6
3,334,078 + -0.7
3,334,078 + -0.6
3,334,083 + +0.3
3,334,084 - +0.7
3,334,106 + +0.1
3,334,106 + +0.4
3,334,107 - -1.6
3,334,107 - +1.2
3,334,107 - +0.6
3,334,107 - +0.5
3,334,109 - -1.0
3,334,164 - -0.0
3,334,164 - +1.0
3,334,176 - -0.7
3,334,176 - +1.2
3,334,176 - -1.0
3,334,191 - CA264_14200 0.11 -0.6
3,334,517 + -2.4
3,334,537 - -0.7
3,335,655 + -1.6
3,335,655 + -0.1
3,335,655 + -1.1
3,335,655 + -0.0
3,335,659 + -0.6
3,335,659 + -1.2
3,335,659 + -0.2

Or see this region's nucleotide sequence