Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14115

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14105 and CA264_14110 are separated by 1 nucleotidesCA264_14110 and CA264_14115 are separated by 161 nucleotidesCA264_14115 and CA264_14120 are separated by 132 nucleotidesCA264_14120 and CA264_14125 are separated by 133 nucleotides CA264_14105: CA264_14105 - T9SS C-terminal target domain-containing protein, at 3,313,128 to 3,314,486 _14105 CA264_14110: CA264_14110 - phosphoribosyltransferase, at 3,314,488 to 3,315,114 _14110 CA264_14115: CA264_14115 - hydrolase, at 3,315,276 to 3,315,962 _14115 CA264_14120: CA264_14120 - hypothetical protein, at 3,316,095 to 3,316,766 _14120 CA264_14125: CA264_14125 - endonuclease V, at 3,316,900 to 3,317,583 _14125 Position (kb) 3315 3316Strain fitness (log2 ratio) -2 -1 0 1 2at 3314.471 kb on + strandat 3314.512 kb on + strandat 3314.529 kb on - strandat 3314.701 kb on + strand, within CA264_14110at 3314.829 kb on + strand, within CA264_14110at 3314.853 kb on - strand, within CA264_14110at 3314.958 kb on + strand, within CA264_14110at 3314.959 kb on - strand, within CA264_14110at 3315.133 kb on + strandat 3315.202 kb on - strandat 3315.419 kb on + strand, within CA264_14115at 3315.420 kb on - strand, within CA264_14115at 3315.520 kb on - strand, within CA264_14115at 3315.520 kb on - strand, within CA264_14115at 3315.601 kb on - strand, within CA264_14115at 3315.601 kb on - strand, within CA264_14115at 3315.679 kb on + strand, within CA264_14115at 3315.679 kb on + strand, within CA264_14115at 3315.680 kb on - strand, within CA264_14115at 3315.683 kb on + strand, within CA264_14115at 3315.684 kb on - strand, within CA264_14115at 3315.715 kb on - strand, within CA264_14115at 3315.828 kb on - strand, within CA264_14115at 3315.950 kb on + strandat 3315.952 kb on + strandat 3315.953 kb on - strandat 3315.953 kb on - strandat 3315.953 kb on - strandat 3315.962 kb on + strandat 3315.963 kb on - strandat 3316.005 kb on + strandat 3316.006 kb on - strandat 3316.013 kb on - strandat 3316.024 kb on + strandat 3316.043 kb on - strandat 3316.069 kb on - strandat 3316.090 kb on + strandat 3316.090 kb on + strandat 3316.090 kb on + strandat 3316.091 kb on - strandat 3316.091 kb on - strandat 3316.094 kb on + strandat 3316.094 kb on + strandat 3316.095 kb on - strandat 3316.095 kb on - strandat 3316.095 kb on - strandat 3316.105 kb on + strandat 3316.105 kb on + strandat 3316.106 kb on - strandat 3316.132 kb on + strandat 3316.132 kb on + strandat 3316.133 kb on - strandat 3316.173 kb on - strand, within CA264_14120at 3316.328 kb on + strand, within CA264_14120at 3316.329 kb on - strand, within CA264_14120at 3316.383 kb on + strand, within CA264_14120at 3316.398 kb on - strand, within CA264_14120at 3316.412 kb on - strand, within CA264_14120at 3316.439 kb on + strand, within CA264_14120at 3316.459 kb on + strand, within CA264_14120at 3316.658 kb on - strand, within CA264_14120at 3316.780 kb on + strandat 3316.780 kb on + strandat 3316.819 kb on + strandat 3316.820 kb on - strandat 3316.832 kb on + strandat 3316.842 kb on + strandat 3316.843 kb on - strandat 3316.843 kb on - strandat 3316.893 kb on + strandat 3316.907 kb on - strandat 3316.909 kb on + strandat 3316.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,314,471 + -1.0
3,314,512 + -0.1
3,314,529 - -0.6
3,314,701 + CA264_14110 0.34 -0.9
3,314,829 + CA264_14110 0.54 -0.4
3,314,853 - CA264_14110 0.58 -1.3
3,314,958 + CA264_14110 0.75 -0.0
3,314,959 - CA264_14110 0.75 -0.1
3,315,133 + +0.6
3,315,202 - +0.7
3,315,419 + CA264_14115 0.21 +0.0
3,315,420 - CA264_14115 0.21 +0.6
3,315,520 - CA264_14115 0.36 -0.2
3,315,520 - CA264_14115 0.36 +0.1
3,315,601 - CA264_14115 0.47 +0.5
3,315,601 - CA264_14115 0.47 +2.7
3,315,679 + CA264_14115 0.59 +0.3
3,315,679 + CA264_14115 0.59 +0.4
3,315,680 - CA264_14115 0.59 -1.7
3,315,683 + CA264_14115 0.59 +0.5
3,315,684 - CA264_14115 0.59 -2.1
3,315,715 - CA264_14115 0.64 -0.4
3,315,828 - CA264_14115 0.80 +0.8
3,315,950 + -0.4
3,315,952 + +1.0
3,315,953 - -0.4
3,315,953 - -0.1
3,315,953 - -1.9
3,315,962 + +2.4
3,315,963 - +0.2
3,316,005 + -0.8
3,316,006 - -0.3
3,316,013 - -0.3
3,316,024 + +0.1
3,316,043 - +0.1
3,316,069 - +0.0
3,316,090 + -1.1
3,316,090 + +0.2
3,316,090 + -0.2
3,316,091 - -1.4
3,316,091 - -0.0
3,316,094 + +0.4
3,316,094 + +1.4
3,316,095 - -0.4
3,316,095 - +0.2
3,316,095 - -0.1
3,316,105 + +2.1
3,316,105 + -0.5
3,316,106 - +0.4
3,316,132 + -0.3
3,316,132 + +1.4
3,316,133 - +0.8
3,316,173 - CA264_14120 0.12 -0.3
3,316,328 + CA264_14120 0.35 +0.7
3,316,329 - CA264_14120 0.35 +0.5
3,316,383 + CA264_14120 0.43 -0.5
3,316,398 - CA264_14120 0.45 -1.1
3,316,412 - CA264_14120 0.47 -0.3
3,316,439 + CA264_14120 0.51 +0.1
3,316,459 + CA264_14120 0.54 -0.3
3,316,658 - CA264_14120 0.84 +0.1
3,316,780 + -1.6
3,316,780 + +0.0
3,316,819 + +0.4
3,316,820 - +0.2
3,316,832 + -0.8
3,316,842 + +0.7
3,316,843 - +0.3
3,316,843 - -1.0
3,316,893 + +0.1
3,316,907 - -0.0
3,316,909 + -0.1
3,316,910 - -0.9

Or see this region's nucleotide sequence