Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13440 and CA264_13445 are separated by 71 nucleotides
CA264_13440: CA264_13440 - hypothetical protein, at 3,136,028 to 3,137,110
_13440
CA264_13445: CA264_13445 - TonB-dependent receptor, at 3,137,182 to 3,139,752
_13445
Position (kb)
3137
3138
3139
3140 Strain fitness (log2 ratio)
-1
0
1 at 3136.213 kb on - strand, within CA264_13440 at 3136.246 kb on + strand, within CA264_13440 at 3136.270 kb on + strand, within CA264_13440 at 3136.352 kb on - strand, within CA264_13440 at 3136.369 kb on + strand, within CA264_13440 at 3136.474 kb on + strand, within CA264_13440 at 3136.488 kb on + strand, within CA264_13440 at 3136.489 kb on - strand, within CA264_13440 at 3136.491 kb on + strand, within CA264_13440 at 3136.497 kb on + strand, within CA264_13440 at 3136.498 kb on - strand, within CA264_13440 at 3136.502 kb on + strand, within CA264_13440 at 3136.502 kb on + strand, within CA264_13440 at 3136.502 kb on + strand, within CA264_13440 at 3136.502 kb on + strand, within CA264_13440 at 3136.503 kb on - strand, within CA264_13440 at 3136.503 kb on - strand, within CA264_13440 at 3136.503 kb on - strand, within CA264_13440 at 3136.503 kb on - strand, within CA264_13440 at 3136.503 kb on - strand, within CA264_13440 at 3136.506 kb on + strand, within CA264_13440 at 3136.507 kb on - strand, within CA264_13440 at 3136.507 kb on - strand, within CA264_13440 at 3136.609 kb on + strand, within CA264_13440 at 3136.649 kb on - strand, within CA264_13440 at 3136.670 kb on - strand, within CA264_13440 at 3136.716 kb on + strand, within CA264_13440 at 3136.717 kb on - strand, within CA264_13440 at 3136.728 kb on - strand, within CA264_13440 at 3136.807 kb on + strand, within CA264_13440 at 3136.855 kb on - strand, within CA264_13440 at 3136.898 kb on - strand, within CA264_13440 at 3136.913 kb on - strand, within CA264_13440 at 3137.004 kb on + strand at 3137.018 kb on - strand at 3137.047 kb on + strand at 3137.047 kb on + strand at 3137.048 kb on - strand at 3137.087 kb on + strand at 3137.157 kb on - strand at 3137.173 kb on - strand at 3137.238 kb on + strand at 3137.321 kb on + strand at 3137.322 kb on - strand at 3137.440 kb on + strand, within CA264_13445 at 3137.441 kb on - strand, within CA264_13445 at 3137.495 kb on + strand, within CA264_13445 at 3137.495 kb on + strand, within CA264_13445 at 3137.538 kb on - strand, within CA264_13445 at 3137.695 kb on - strand, within CA264_13445 at 3137.706 kb on + strand, within CA264_13445 at 3137.718 kb on + strand, within CA264_13445 at 3137.724 kb on + strand, within CA264_13445 at 3137.726 kb on + strand, within CA264_13445 at 3137.853 kb on - strand, within CA264_13445 at 3137.911 kb on - strand, within CA264_13445 at 3138.141 kb on + strand, within CA264_13445 at 3138.236 kb on + strand, within CA264_13445 at 3138.237 kb on - strand, within CA264_13445 at 3138.303 kb on - strand, within CA264_13445 at 3138.351 kb on - strand, within CA264_13445 at 3138.351 kb on - strand, within CA264_13445 at 3138.411 kb on + strand, within CA264_13445 at 3138.412 kb on - strand, within CA264_13445 at 3138.425 kb on + strand, within CA264_13445 at 3138.458 kb on + strand, within CA264_13445 at 3138.550 kb on + strand, within CA264_13445 at 3138.594 kb on - strand, within CA264_13445 at 3138.635 kb on + strand, within CA264_13445 at 3138.643 kb on - strand, within CA264_13445 at 3138.844 kb on - strand, within CA264_13445 at 3138.866 kb on + strand, within CA264_13445 at 3138.966 kb on + strand, within CA264_13445 at 3138.967 kb on - strand, within CA264_13445 at 3139.026 kb on + strand, within CA264_13445 at 3139.026 kb on + strand, within CA264_13445 at 3139.026 kb on + strand, within CA264_13445 at 3139.204 kb on + strand, within CA264_13445 at 3139.280 kb on + strand, within CA264_13445 at 3139.280 kb on + strand, within CA264_13445 at 3139.414 kb on + strand, within CA264_13445 at 3139.437 kb on + strand, within CA264_13445 at 3139.517 kb on + strand at 3139.517 kb on + strand at 3139.517 kb on + strand at 3139.517 kb on + strand at 3139.517 kb on + strand at 3139.526 kb on - strand at 3139.553 kb on - strand at 3139.585 kb on - strand at 3139.609 kb on + strand at 3139.746 kb on - strand at 3139.765 kb on - strand at 3139.809 kb on - strand at 3139.900 kb on + strand at 3139.975 kb on - strand at 3140.307 kb on + strand at 3140.308 kb on - strand at 3140.308 kb on - strand at 3140.308 kb on - strand at 3140.312 kb on + strand at 3140.317 kb on + strand at 3140.317 kb on + strand at 3140.318 kb on - strand at 3140.320 kb on - strand at 3140.320 kb on - strand at 3140.321 kb on + strand at 3140.322 kb on - strand at 3140.437 kb on - strand at 3140.449 kb on + strand at 3140.450 kb on - strand at 3140.630 kb on - strand at 3140.733 kb on + strand at 3140.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 3,136,213 - CA264_13440 0.17 -1.4 3,136,246 + CA264_13440 0.20 -0.2 3,136,270 + CA264_13440 0.22 -0.7 3,136,352 - CA264_13440 0.30 +0.4 3,136,369 + CA264_13440 0.31 -0.2 3,136,474 + CA264_13440 0.41 -1.1 3,136,488 + CA264_13440 0.42 -1.1 3,136,489 - CA264_13440 0.43 -0.3 3,136,491 + CA264_13440 0.43 +0.3 3,136,497 + CA264_13440 0.43 -0.1 3,136,498 - CA264_13440 0.43 -0.1 3,136,502 + CA264_13440 0.44 -0.7 3,136,502 + CA264_13440 0.44 +1.4 3,136,502 + CA264_13440 0.44 -0.2 3,136,502 + CA264_13440 0.44 -0.9 3,136,503 - CA264_13440 0.44 -0.1 3,136,503 - CA264_13440 0.44 -0.4 3,136,503 - CA264_13440 0.44 +0.1 3,136,503 - CA264_13440 0.44 +1.7 3,136,503 - CA264_13440 0.44 +0.6 3,136,506 + CA264_13440 0.44 -1.3 3,136,507 - CA264_13440 0.44 -0.7 3,136,507 - CA264_13440 0.44 -0.3 3,136,609 + CA264_13440 0.54 -1.7 3,136,649 - CA264_13440 0.57 -0.9 3,136,670 - CA264_13440 0.59 +0.1 3,136,716 + CA264_13440 0.64 -0.4 3,136,717 - CA264_13440 0.64 -0.1 3,136,728 - CA264_13440 0.65 -0.6 3,136,807 + CA264_13440 0.72 +0.2 3,136,855 - CA264_13440 0.76 -0.5 3,136,898 - CA264_13440 0.80 +0.2 3,136,913 - CA264_13440 0.82 -0.8 3,137,004 + -0.5 3,137,018 - -0.3 3,137,047 + -0.9 3,137,047 + -0.8 3,137,048 - -1.7 3,137,087 + +1.2 3,137,157 - -0.8 3,137,173 - -0.5 3,137,238 + -0.4 3,137,321 + -0.6 3,137,322 - -0.5 3,137,440 + CA264_13445 0.10 -0.5 3,137,441 - CA264_13445 0.10 -0.3 3,137,495 + CA264_13445 0.12 -0.4 3,137,495 + CA264_13445 0.12 -1.2 3,137,538 - CA264_13445 0.14 -0.8 3,137,695 - CA264_13445 0.20 +0.1 3,137,706 + CA264_13445 0.20 +0.0 3,137,718 + CA264_13445 0.21 -1.0 3,137,724 + CA264_13445 0.21 -0.5 3,137,726 + CA264_13445 0.21 -0.2 3,137,853 - CA264_13445 0.26 -1.0 3,137,911 - CA264_13445 0.28 -0.6 3,138,141 + CA264_13445 0.37 -0.4 3,138,236 + CA264_13445 0.41 -0.4 3,138,237 - CA264_13445 0.41 +0.1 3,138,303 - CA264_13445 0.44 -1.1 3,138,351 - CA264_13445 0.45 -0.7 3,138,351 - CA264_13445 0.45 -1.1 3,138,411 + CA264_13445 0.48 -1.3 3,138,412 - CA264_13445 0.48 -1.2 3,138,425 + CA264_13445 0.48 -0.5 3,138,458 + CA264_13445 0.50 -0.0 3,138,550 + CA264_13445 0.53 -0.3 3,138,594 - CA264_13445 0.55 +1.4 3,138,635 + CA264_13445 0.57 -0.2 3,138,643 - CA264_13445 0.57 -1.3 3,138,844 - CA264_13445 0.65 -0.5 3,138,866 + CA264_13445 0.65 -0.2 3,138,966 + CA264_13445 0.69 -1.0 3,138,967 - CA264_13445 0.69 +0.2 3,139,026 + CA264_13445 0.72 -0.1 3,139,026 + CA264_13445 0.72 -0.8 3,139,026 + CA264_13445 0.72 +0.1 3,139,204 + CA264_13445 0.79 -0.2 3,139,280 + CA264_13445 0.82 -0.6 3,139,280 + CA264_13445 0.82 -0.2 3,139,414 + CA264_13445 0.87 -0.7 3,139,437 + CA264_13445 0.88 -0.2 3,139,517 + -1.1 3,139,517 + -0.0 3,139,517 + -0.9 3,139,517 + -0.6 3,139,517 + -0.4 3,139,526 - +0.9 3,139,553 - -0.4 3,139,585 - +0.7 3,139,609 + -0.5 3,139,746 - -0.6 3,139,765 - +1.2 3,139,809 - -0.5 3,139,900 + +0.1 3,139,975 - -0.3 3,140,307 + -0.2 3,140,308 - -0.2 3,140,308 - -0.5 3,140,308 - -0.4 3,140,312 + -0.3 3,140,317 + +0.3 3,140,317 + -1.5 3,140,318 - +0.2 3,140,320 - +0.5 3,140,320 - -0.2 3,140,321 + +0.0 3,140,322 - -0.3 3,140,437 - -0.9 3,140,449 + -0.2 3,140,450 - -0.1 3,140,630 - -0.1 3,140,733 + -0.2 3,140,752 + -0.6
Or see this region's nucleotide sequence